Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq938 138 1e-27 seq29890 129 6e-25 seq33853 116 4e-21 >seq938 Length=1173706 Score = 138 bits (152), Expect = 1e-27 Identities = 308/454 (68%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 |||| | ||| ||| ||||||||||||| || ||||||||||| || || ||| Sbjct 1021205 CTCACTGCCGATGAGAAGCATTTCATCAAACATGTTCTGGCCTTCTTTGCTGCCTCCGAT 1021146 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || || |||| ||| ||| | || || || |||||| || ||||||| Sbjct 1021145 GGCATCGTTTTGGAGAATCTAGCTGGCAGGTTCATGAAAGAAGTCCAGGTTTCCGAGGCG 1021086 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || |||| |||| | ||| | ||| |||| ||||||||||||| |||| || Sbjct 1021085 CGCGCGTTTTACGGATTCCAGAT-TGCAATCGAGAACATCCACTCCGAGATGTACAGTCT 1021027 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 || |||| | | |||| ||| ||| |||||| | | || ||||| || || || Sbjct 1021026 TCTGCTCGAAACATACATCAAAGATTCGGCCGAGAAGAGTCGCCTCTTCCGAGCTATTGA 1020967 Query 59909 GAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAG 59967 || ||||| || || | | || || | |||||| | | ||||| | | ||| Sbjct 1020966 CACAGTCCCATGC-GTGGAGAAGAAGGCCAAGTGGGCCCTACGTTGGATC-GAC--GGAT 1020911 Query 59968 C---ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 | ||| ||||| | || || | || ||||| ||||| || || || |||||||| | Sbjct 1020910 CCGAATCTTTTGCCGAGCGGCTACTCGCCTTTGCTTGCGTTGAGGGGATATTCTTCTCCG 1020851 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 | ||||| || || || ||| | || || || ||||||||||| || | | ||| | Sbjct 1020850 GGAGCTTCTGCGCCATATTTTGGTTGAAGAAACGCGGCCTCATGCCAGGATTAACTTTTT 1020791 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||| || || | |||||||| || || Sbjct 1020790 CCAACGAGCTAATCTCGAGAGACGAGGGTCTGCA 1020757 >seq29890 Length=111316 Score = 129 bits (142), Expect = 6e-25 Identities = 305/448 (68%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| ||||||||||||| || || ||||||||||| || || || || || Sbjct 72881 GACGAGAAGCATTTCATCAAACACGTGCTCGCCTTCTTCGCCGCATCCGACGGCATCGTA 72822 Query 59739 ATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 |||| || | | | | ||| ||||| |||||| | | ||||| ||| | | Sbjct 72821 TTGGAGAACCTTGCG--GGCCGATTCATGAAGGAGGTCCAGGTCTCGGAGGCTCGGGCCT 72764 Query 59797 TCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 |||||| | |||| ||| || ||| ||||||||||||| |||| ||| || || Sbjct 72763 TCTACGGCTTTCAGATCGC-CATAGAGAACATCCACTCCGAGATGTACAGCCTCTTGCTC 72705 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGG--CTGGTCTGTTCCGTGCCATAGAGACG- 59912 || | | |||| ||| | | |||||| ||| ||| ||| || || || || Sbjct 72704 GAAACTTACATCAAAGATTCCGCGGAGAAGAACCTGCTCT--TCCACGCGATCGAAACCA 72647 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCAT 59970 ||||| ||| | || || || | |||||| | | ||||| ||| | |||| | Sbjct 72646 TCCCCTGCATCGAGACGAAGGCCA-AGTGGGCCCTCCGCTGGATCGAGGGGTCGGAG--T 72590 Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 | ||||| | || | | || || || || || ||||| || ||||| || || | Sbjct 72589 CGTTTGCGGAGCGAATAGTGGCCTTCGCTTGTGTCGAAGGTATATTCTTTTCCGGAAGCT 72530 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 |||| | || ||||||||||||||||| || || |||||||| |||| |||||| |||| Sbjct 72529 TCTGCTCCATATTCTGGCTCAAAAAGCGAGGGCTAATGCCGGGACTGACTTTCTCGAACG 72470 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || | || ||| | ||||| || || || Sbjct 72469 AGTTAATCTCCAGAGACGAAGGGCTGCA 72442 >seq33853 Length=384389 Score = 116 bits (128), Expect = 4e-21 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| | |||| |||||| || ||||||| || ||||||| |||||| || Sbjct 88932 GGCGCGAG--CGCAGGTAGTACGTG---GTCTTGACGCCTGCCTTCCATGCGTACATGTA 88878 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302 ||| || |||| | | | ||||||| |||||||| | ||| ||||||||| ||| Sbjct 88877 CATGGAGGAAAGCTGGCCGATGTTCGGGTTTTCCATGAACAGGTTCAGCGACTGGCTCTG 88818 Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 ||||||||| || ||||| | || |||| |||||| | || ||| ||||| | |||||| Sbjct 88817 GTCGATGTAGGCGCCGCGCGCAGCTGCCAGGTCGATCAGCGCCTTCTGCGGCAGCTCCCA 88758 Query 78363 GATGGTCCGGTA 78374 | ||| ||||| Sbjct 88757 CACGGTGCGGTA 88746 Score = 104 bits (114), Expect = 3e-17 Identities = 136/185 (74%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 ||| | ||||| ||||| | || |||||| | |||||| |||| || | |||||| Sbjct 88746 TACCGCACCGTGTGGGAGCTGCCGCAGAAGGCGCTGATCGACCTGGCAGCTGCGCGCGGC 88805 Query 20690 GCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAG 20749 ||||||||||||||| ||||||||| || | |||||||| || |||| | | | || Sbjct 88806 GCCTACATCGACCAGAGCCAGTCGCTGAACCTGTTCATGGAAAACCCGAACATCGGCCAG 88865 Query 20750 CTGAGCTCCATGCATATGTACGGCTGGCACAAGG--GGC-TCAAGACGGGCATGTACTAT 20806 || ||||||| | ||||||| ||| |||| ||| ||||||| || |||||| Sbjct 88866 CTTTCCTCCATGTACATGTACGCATGG---AAGGCAGGCGTCAAGAC---CACGTACTAC 88919 Query 20807 CTGCG 20811 ||||| Sbjct 88920 CTGCG 88924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545770163306880