Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq12962 187 8e-43 >seq12962 Length=520891 Score = 187 bits (206), Expect = 8e-43 Identities = 237/324 (73%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 40090 GCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGAT 40149 |||| |||| |||||| ||| | |||| |||||||| | ||||| ||| Sbjct 88837 GCCGTAGGTGATGATCTGGCTGACGTGGTCGCGGCCGTACTTGCGCGCCACGTAGTCGAT 88896 Query 40150 GACCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 |||||| |||| || | ||| |||||||||||| | ||| ||||| |||||||| Sbjct 88897 CACCTCGTCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATCGACACGCGT 88954 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 ||||| || ||||| |||||||| | || | || ||| || ||||||||||||||| Sbjct 88955 TCGGGATTGAGGAAGCGCTCGAACAGCAGGTTGAACTGCAGCGGGTCGAGGTCGGTGATC 89014 Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 || | || ||||||||||| || ||||||| || || || || ||| | | Sbjct 89015 TTCAGCACCCACGCCACCAGCGAACCCGCGCCCGAGCCGCGGCCCGGGCCCACCGGGATG 89074 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 ||||||| |||| ||||| ||||||||| || |||| |||||||||| ||||||||| Sbjct 89075 CCGTTCTGCTTGCCCCAGTTGATGAAGTCCGCCACGATCAGGAAGTAGCCGGGGAAGCCC 89134 Query 40388 ATCTGGATGATCATGTCGATCTCG 40411 |||| |||||| | ||| | |||| Sbjct 89135 ATCTTGATGATGACGTCCAGCTCG 89158 Score = 170 bits (188), Expect = 6e-38 Identities = 349/515 (68%), Gaps = 14/515 (3%) Strand=Plus/Plus Query 38845 GCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGG 38904 ||||| ||||||| ||| | ||| || ||| ||||||| || || | | ||| Sbjct 87586 GCCCTGGCCCACGCCCTTGATCGCGCCGAGACCGTAGCGGATTTCCTTCGGCTTGGTCGC 87645 Query 38905 GGTGAAGGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCG 38964 ||| | || |||| | |||||| |||||||| || ||||| || |||| Sbjct 87646 CACGAACATGAAGTCCGAGGCGTTCACGTCCGGCGGCAGCACGGTGAGGCCGAT-CGCCT 87704 Query 38965 CGC-CTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGG 39023 | |||| ||| | | || || ||||| ||| ||| |||| | || | | Sbjct 87705 TGGACTCGTCGATGAAGGTCACCGCCTTGTCGGTGTTGTCCATGTCCGACGAGATCGTCG 87764 Query 39024 CCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCC 39083 | |||||| ||||||| |||||||||| |||||| | || || |||||| || ||| Sbjct 87765 CGGCCATGAACTCGGCGGGGTAGTGCGCCTTCAGCCAGGCGGTCTGGTAGGAGACCAGCG 87824 Query 39084 CGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCC 39143 |||| || || | ||||| |||||||||| |||| |||||||| | | || ||| Sbjct 87825 CGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTCTCCATCAGGTCGA 87884 Query 39144 ACA------CCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGA 39197 | | | |||| | | |||| | || ||| | ||||| ||| | ||| Sbjct 87885 AGATTTCGTCGGCCTTGCCGCTGCTGAGCCCGT--CCTTGGCCGCGCCCTCGC----GGA 87938 Query 39198 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCA 39257 | || || ||||| |||| ||||| |||||||||||||| || || ||||||| Sbjct 87939 ACTTGGCGCGTTCCTTCGCCATCTCCTCGACTTTCTTCTTGCCCATCGCGCGGCGCAGCA 87998 Query 39258 GGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCT 39317 ||||||| ||| || ||||||| ||| |||||||||| || | ||||||||||| Sbjct 87999 GGTCGGCGCCGCCGAGCGTGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCT 88058 Query 39318 GGTAGATGATGAGCCCGTACGTCGGGTCCAGGATC 39352 |||||| |||| ||||| ||| | ||||||| Sbjct 88059 GGTAGACCATGATGCCGTAGGTCTCTTTCAGGATC 88093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159641132344848