Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq12962 170 6e-38 >seq12962 Length=520891 Score = 170 bits (188), Expect = 6e-38 Identities = 348/511 (68%), Gaps = 6/511 (1%) Strand=Plus/Plus Query 38185 GCTCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGG 38244 || || ||||||| ||| | ||| || ||| ||||||| ||| | | | ||| Sbjct 87586 GCCCTGGCCCACGCCCTTGATCGCGCCGAGACCGTAGCGGATTTCCTTCGGCTTGGTCGC 87645 Query 38245 GGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCT 38304 ||| | ||| |||| | |||||| |||||||| || ||||| || ||||| Sbjct 87646 CACGAACATGAAGTCCGAGGCGTTCACGTCCGGCGGCAGCACGGTGAGGCCGAT-CGCCT 87704 Query 38305 -GCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGG 38363 | ||||| ||| | | || || ||||| ||| ||| |||| | || | | Sbjct 87705 TGGACTCGTCGATGAAGGTCACCGCCTTGTCGGTGTTGTCCATGTCCGACGAGATCGTCG 87764 Query 38364 CCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTC 38423 | |||||| ||||||| |||||||||| |||||| | || || |||||| || || Sbjct 87765 CGGCCATGAACTCGGCGGGGTAGTGCGCCTTCAGCCAGGCGGTCTGGTAGGAGACCAGCG 87824 Query 38424 CGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCC 38483 |||| || || | ||||| |||||||||| |||| |||||||| | | || ||| Sbjct 87825 CGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTCTCCATCAGGTCGA 87884 Query 38484 ACAC--CGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTGGAAGTT 38541 | | || | | | || || | ||| | || | || || |||| |||| || Sbjct 87885 AGATTTCGTCGGCCTTGCCGCTGCTGAGCC-CGTCCTTGGCC-GCGCCCTCGCGGAACTT 87942 Query 38542 CACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTC 38601 || ||||| |||| | ||||| |||||||||||||| ||||| || || ||||| Sbjct 87943 GGCGCGTTCCTTCGCCATCTCCTCGACTTTCTTCTTGCCCATCGCGCGGCGCAGCAGGTC 88002 Query 38602 GGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTA 38661 ||| ||||| ||||| ||| | | |||||||||| || | ||||||||||||||| Sbjct 88003 GGCGCCGCCGAGCGTGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCTGGTA 88062 Query 38662 GATGATGAGCCCGAAGGTCGGGTCCAGGATC 38692 || |||| ||| ||||| | ||||||| Sbjct 88063 GACCATGATGCCGTAGGTCTCTTTCAGGATC 88093 Score = 147 bits (162), Expect = 7e-31 Identities = 228/324 (70%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 39430 GCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGAT 39489 |||||| || |||||| ||| | ||||| ||||||||| | ||||| ||| Sbjct 88837 GCCGTAGGTGATGATCTGGCTGACGTGGTCGCGGCCGTACTTGCGCGCCACGTAGTCGAT 88896 Query 39490 CACGTCGCCACGGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGC 39547 ||| ||| | ||||| | ||| |||||||||||| | ||| ||||| || ||||| Sbjct 88897 CACCTCGTCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATCGACACGCGT 88954 Query 39548 TCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATC 39607 || || || ||||| |||||||| | || | | | ||||| |||||||||||| Sbjct 88955 TCGGGATTGAGGAAGCGCTCGAACAGCAGGTTGAACTGCAGCGGGTCGAGGTCGGTGATC 89014 Query 39608 CCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACA 39667 || | |||| ||||||| || || | ||||| || || ||||| ||| | Sbjct 89015 TTCAGCACCCACGCCACCAGCGAACCCGCGCCCGAGCCGCGGCCCGGGCCCACCGGGATG 89074 Query 39668 CCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCC 39727 ||||||| ||| ||||| ||||||||| || |||| |||||||| ||||| ||| Sbjct 89075 CCGTTCTGCTTGCCCCAGTTGATGAAGTCCGCCACGATCAGGAAGTAGCCGGGGAAGCCC 89134 Query 39728 ATCTGGTTGATCATGTCGATCTCG 39751 |||| | |||| | ||| | |||| Sbjct 89135 ATCTTGATGATGACGTCCAGCTCG 89158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159475526206800