Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq104699 93.3 3e-14 seq18673 86.0 4e-12 seq25453 84.2 2e-11 seq7521 84.2 2e-11 seq25458 82.4 5e-11 >seq104699 Length=868 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || |||||||| |||||| ||||| |||| ||||| ||| || Sbjct 616 ATGCAGATCTTTGTAAAGACTCTTACGGGGAAAACCATTACCCTTGAGGTCGAGAGCTCC 675 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || || ||| || || ||||| ||||| | || || | Sbjct 676 GACACCATTGATAAC--GTAAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACC 733 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| |||| || | |||| |||| |||| Sbjct 734 AGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGAACCTTGGCCGACTACA 793 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||| |||| ||||| || | ||||||| || Sbjct 794 ACATCCAGAAAGAATCGACTCTGCACTTGGTGCTGAGGCTGCGTGGTGG 842 >seq18673 Length=525508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| |||||||| || || || |||||| | || ||||| || | Sbjct 466566 AATGCAGATTTTTGTTAAAACTCTCACAGGAAAGACCATTACATTAGAGGTCGAGAGTTC 466507 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| ||||| |||||| ||||||||||| |||| ||| Sbjct 466506 AGATACTATAGACAAT--GTCAAGGCAAAAATCCAAGACAAAGAAGGCATTCCTCCGGAT 466449 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || |||||||| || || || | || || | | | | |||||||| Sbjct 466448 CAGCAACGCTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCCGATTAC 466389 Query 27967 AACATCCAAAAAGAG 27981 ||||| || || ||| Sbjct 466388 AACATTCAGAAGGAG 466374 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| |||||||| || || || |||||| | || ||||| || | Sbjct 503795 AATGCAGATTTTTGTTAAAACTCTCACAGGAAAGACCATTACATTAGAGGTCGAGAGTTC 503736 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| ||||| |||||| ||||||||||| |||| ||| Sbjct 503735 AGATACTATAGACAAT--GTCAAGGCAAAAATCCAAGACAAAGAAGGCATTCCTCCGGAT 503678 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || |||||||| || || || | || || | | | | |||||||| Sbjct 503677 CAGCAACGCTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCCGATTAC 503618 Query 27967 AACATCCAAAAAGAG 27981 ||||| || || ||| Sbjct 503617 AACATTCAGAAGGAG 503603 >seq25453 Length=344677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||| ||||| |||||||| |||||| | || || |||||| | Sbjct 137225 AATGCAGATTTTTGTGAAGACTCTCACTGGGAAGACTATTACTCTGGAGGTTGAAAGCTC 137166 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| || || || || || |||||||| | || || Sbjct 137165 AGACACAGTTGACAAT--GTTAAGGCTAAGATCCAGGATAAAGAAGGGATCCCTCCTGAT 137108 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 |||||| |||| || ||||| || || || | || || | || | |||| | ||||| Sbjct 137107 CAGCAAAGGTTGATATTTGCTGGGAAGCAGCTCGAGGATGGTCGAACACTTG-CAGATTA 137049 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||| ||| ||| | ||| | || | ||| | ||||| || Sbjct 137048 CAACATCCAAAAGGAGTCAACTCTCCATCTCGTCCTCCGTCTTCGTGGTGG 136998 >seq7521 Length=567817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || ||||| || || || || |||| || |||||| || Sbjct 337120 ATGCAGATCTTCGTTAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTTGAAAGCTCC 337061 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| || || ||||| ||||| | ||| || | Sbjct 337060 GACACCATCGATAAT--GTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCGCCAGACC 337003 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||| || | || |||| || | |||| |||| |||| Sbjct 337002 AGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCTTGGCCGACTACA 336943 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||| |||| ||||| || | ||||||| || Sbjct 336942 ACATCCAGAAAGAATCGACTCTGCACTTGGTGCTGAGGCTGCGTGGTGG 336894 >seq25458 Length=394795 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| |||||||| | || || |||||| | || ||||| || | Sbjct 387163 AATGCAGATTTTTGTTAAAACTCTCGCAGGAAAGACCATTACATTAGAGGTCGAGAGTTC 387222 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| ||||| |||||| ||||||||||| |||| ||| Sbjct 387223 AGATACTATAGACAAT--GTCAAGGCAAAAATCCAAGACAAAGAAGGCATTCCTCCGGAT 387280 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || |||||||| || || || | || || | | | | |||||||| Sbjct 387281 CAGCAACGCTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCCGATTAC 387340 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||| || || ||| ||| | ||| | || ||| Sbjct 387341 AACATTCAGAAGGAGTCGACTCTCCATCTAGTGTTG 387376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354119972248104