Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq25453 96.9 3e-15 seq191313 93.3 4e-14 seq25458 86.0 5e-12 seq18673 86.0 5e-12 >seq25453 Length=344677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| || || | ||| |||||| ||| ||||| || ||||| || ||| Sbjct 136541 CCTCCCCTCAGGCGCAAAACAAGATGCAGCGTGGACTCCTTTTGGATGTTATAGTCTGCA 136600 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATAT-AAGACGCTGCTGGTCGGTGGG 39176 ||||| | | || ||||||||||| || ||||| || || |||||||| || | || Sbjct 136601 AGTGTCCTGCCATCCTCAAGCTGTTTACCAGCAAAGATCAATTCGCTGCTGATCAGGAGG 136660 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | ||||||||| ||| ||| | || | | | | | | ||| || ||| | Sbjct 136661 AATTCCTTCTTTGTCC-TGAATTTTGGCTTTAACATTGTCAATCGTGTCAGAACTCTCGA 136719 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | || || |||| || ||||||||||| ||||| Sbjct 136720 CCTCCAAGGTGATGGTCTTCCCAGTCAAGGTCTTAACAAAGATCTGCAT 136768 >seq191313 Length=592 Score = 93.3 bits (102), Expect = 4e-14 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| ||||| || || | ||| | ||| || || ||||| || || Sbjct 327 AAATATCTGCATGCCCCCTCTCAACCGAAGCACAAGATGCAGAGTTGATTCTTTCTGAAT 386 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| || || ||||| |||||| | || || ||||| || || ||||| || | | ||| Sbjct 387 ATTGTAGTCAGCAAGCGTTCGTCCATCTTCGAGCTGCTTCCCAGCAAAGATCAATCTCTG 446 Query 39165 CTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTA 39222 |||||| |||||| || ||||||||| ||| ||| || | | | | | | | ||| Sbjct 447 CTGGTCAGGTGGGATACCT-TCTTTGTCC-TGAATTTTTGCCTTAACATTGTCTATGGTA 504 Query 39223 TCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 || ||| || || | ||||| | ||||| || || ||||||||||| || ||| Sbjct 505 TCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGC 564 Query 39283 AT 39284 || Sbjct 565 AT 566 >seq25458 Length=394795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || || |||| ||| || || || || || || |||||||| || Sbjct 385653 CCACCCCTCAACCGCAAGACCAGATGCAGAGTTGATTCCTTCTGGATGTTATAATCCGCG 385594 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||||||||| |||||||| | ||||||||||||| || Sbjct 385593 AGTGTTCTGCCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGA 385534 Query 39178 ACGCTCTCTTTGTCC 39192 | || ||||||||| Sbjct 385533 ATGCCTTCTTTGTCC 385519 >seq18673 Length=525508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || || |||| ||| || || || || || || |||||||| || Sbjct 459921 CCACCCCTCAACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCG 459980 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||||||||| |||||||| | ||||||||||||| || Sbjct 459981 AGTGTTCTGCCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGA 460040 Query 39178 ACGCTCTCTTTGTCC 39192 | || ||||||||| Sbjct 460041 ATGCCTTCTTTGTCC 460055 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || || |||| ||| || || || || || || |||||||| || Sbjct 460377 CCACCCCTCAACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCG 460436 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||||||||| |||||||| | ||||||||||||| || Sbjct 460437 AGTGTTCTGCCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGA 460496 Query 39178 ACGCTCTCTTTGTCC 39192 | || ||||||||| Sbjct 460497 ATGCCTTCTTTGTCC 460511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || || |||| ||| || || || || || || |||||||| || Sbjct 497843 CCACCCCTCAACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCG 497902 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||||||||| |||||||| | ||||||||||||| || Sbjct 497903 AGTGTTCTGCCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGA 497962 Query 39178 ACGCTCTCTTTGTCC 39192 | || ||||||||| Sbjct 497963 ATGCCTTCTTTGTCC 497977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || || |||| ||| || || || || || || |||||||| || Sbjct 498299 CCACCCCTCAACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCG 498358 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||||||||| |||||||| | ||||||||||||| || Sbjct 498359 AGTGTTCTGCCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGA 498418 Query 39178 ACGCTCTCTTTGTCC 39192 | || ||||||||| Sbjct 498419 ATGCCTTCTTTGTCC 498433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || || |||| ||| || || || || || || |||||||| || Sbjct 498755 CCACCCCTCAACCGCAAGACCAGATGCAGAGTCGATTCCTTCTGGATGTTATAATCCGCG 498814 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||||||||| |||||||| | ||||||||||||| || Sbjct 498815 AGTGTTCTGCCATCTTCGAGCTGTTTGCCTGCAAATATCAATCGCTGCTGGTCGGGAGGA 498874 Query 39178 ACGCTCTCTTTGTCC 39192 | || ||||||||| Sbjct 498875 ATGCCTTCTTTGTCC 498889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427442393327576