Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq29890 181 1e-40 seq938 165 1e-35 seq21561 111 2e-19 >seq29890 Length=111316 Score = 181 bits (200), Expect = 1e-40 Identities = 411/616 (67%), Gaps = 4/616 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || || || || || || ||||| ||||| ||||| ||||| || || || Sbjct 72424 AAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGTC 72483 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || |||||||| || || ||||||||||| ||||| | ||| ||| |||||| Sbjct 72484 AGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGAGCAGAAGCTTCCGGAAAAG 72543 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG--TTGT 48315 ||||| ||||| || || || || | || ||||| || | || || | Sbjct 72544 AATATACCTTCGACACAAGCGAAGGC--CACTATTCGCTCCGCAAACGACTCCGACCCCT 72601 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || | ||||| | |||||| ||| | || || || ||||| || || | Sbjct 72602 CGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGCGT 72661 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||||| | ||| || || | |||||| | |||||| || | || || || |||| Sbjct 72662 GGAAGAGCAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGTACA 72721 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | |||||||| || || || || || |||||||| ||||| || | || || | || Sbjct 72722 TCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGAGA 72781 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| |||||| | ||||| | || | ||||| ||| || || || || | Sbjct 72782 CCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGCGG 72841 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || | || ||||| || |||| || |||| | ||| || | ||||| Sbjct 72842 CGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCAGT 72901 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 || ||| | || | ||| || || ||||| ||||| || || || || ||||| | Sbjct 72902 GTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTTCT 72961 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | ||||| | ||| || | | ||| || || ||||| ||| |||| || ||| ||| Sbjct 72962 TGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGTTTG 73021 Query 48736 TTGCAAGGATAGGTTC 48751 || |||| ||||| Sbjct 73022 GGGCGAGGAGGGGTTC 73037 >seq938 Length=1173706 Score = 165 bits (182), Expect = 1e-35 Identities = 387/580 (67%), Gaps = 8/580 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 ||||| || || || || ||||| || ||||| |||| ||||| ||||| || | Sbjct 1020742 CATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGTTAAT 1020801 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AAGAA 48259 || ||||| || || ||||| || | ||||||||| || || ||| ||| | | ||||| Sbjct 1020802 CCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGC-GCAGAAGCTCCCGGAGAAGAA 1020860 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTCGTTGTG 48316 ||| || || ||| ||||| ||| || | ||| | || || | ||| | Sbjct 1020861 TATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGATCCGTCG-- 1020918 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| ||| | ||||| | |||||||||| || || || | ||| || ||||| Sbjct 1020919 -ATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAATAGCTCG 1020977 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||| | || || |||||| | ||| || || | | |||||| ||||| Sbjct 1020978 GAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGACTGTACAT 1021037 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 |||||||| || || || ||||| ||||| ||||||||||| | ||| || | | Sbjct 1021038 CTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCTCGGAAAC 1021097 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| || || | || | |||| | |||||| || || ||||| ||||| Sbjct 1021098 CTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGGAGGCAGC 1021157 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 ||| || || | |||||||| || |||| || || | || ||| || | ||||| Sbjct 1021158 AAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTTCCCAGTG 1021217 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 || || | || | |||||| || || ||||||||||| || || || || || || Sbjct 1021218 GGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGGCCTTCTT 1021277 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 ||||| | ||| || | | ||| | || ||||| ||| Sbjct 1021278 GTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATA 1021317 >seq21561 Length=15626 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| ||||||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||| ||||| ||||| || | ||| ||||| || || || || | |||||| Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| || ||||| ||| | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||||| | || ||||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| |||||| |||| |||| ||||||||||| |||||| |||| |||| || Sbjct 4958 CTCTCTCTCATATCGAGTGTATAAGGTCTCAAATTCATCACCCCAACAATCAGCCAACCC 4899 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| | || ||||| || | ||| ||||| | |||| | |||| || |||||| Sbjct 4898 AGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAAA 4839 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| ||||||| || | ||| || || Sbjct 4838 TAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691180242753280