Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq29890 156 6e-33 seq938 140 5e-28 seq21561 111 2e-19 >seq29890 Length=111316 Score = 156 bits (172), Expect = 6e-33 Identities = 395/599 (66%), Gaps = 4/599 (1%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| || || || || || || ||||| ||||| ||||| ||||| || || || Sbjct 72424 AAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGTC 72483 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || || |||||||| || |||||||||||||| ||||| | ||| ||| |||||| Sbjct 72484 AGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGAGCAGAAGCTTCCGGAAAAG 72543 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC--ATTAT 46804 ||||| ||||| ||| ||||| || || | || ||||| || | | | | Sbjct 72544 AATATACCTTCGACACAAGCGAAGGCCACTA--TTCGCTCCGCAAACGACTCCGACCCCT 72601 Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| | | ||||| | ||||| ||| | || || || ||||| || || | Sbjct 72602 CGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGCGT 72661 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 ||||| | ||| || || | |||||| | || || || | || || || |||| Sbjct 72662 GGAAGAGCAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGTACA 72721 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 | || || || ||||| || || || |||||||| ||||| || | || || | | Sbjct 72722 TCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGAGA 72781 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 ||| ||||| | ||||| | | | ||||| || || || || || | Sbjct 72782 CCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGCGG 72841 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT 47104 | || || || | || ||||| || |||| || || || | ||| || | ||||| Sbjct 72842 CGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCAGT 72901 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 || ||| | || | ||| || || ||||| |||||||| || || || ||||| | Sbjct 72902 GTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTTCT 72961 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 | ||||| | ||| || | | | || || ||||| || ||| |||| || ||| ||| Sbjct 72962 TGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGTTT 73020 >seq938 Length=1173706 Score = 140 bits (154), Expect = 5e-28 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 ||||| || || || || || || || ||||| |||| ||||| ||||| || | Sbjct 1020742 CATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGTTAAT 1020801 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA-AAGAA 46748 || ||||| || || || || || | ||||||||| || || ||| ||| | | ||||| Sbjct 1020802 CCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGC-GCAGAAGCTCCCGGAGAAGAA 1020860 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGA 46806 ||| || || || || || |||| || | ||| | || | | ||| | Sbjct 1020861 TATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGATCCGTCG-- 1020918 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | | ||||| | ||||| |||| || || || | ||| || ||||| Sbjct 1020919 ATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAATAGCTCGG 1020978 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 ||||| | || || | |||||| | ||||| || | | |||||| ||||| Sbjct 1020979 AAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGACTGTACATC 1021038 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||| || || || ||||| ||||||||||| | || || | || | Sbjct 1021039 TCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCTCGGAAACC 1021098 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || ||| | || | ||| | |||||| || || ||||| |||||| Sbjct 1021099 TGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGGAGGCAGCA 1021158 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || |||| |||||||| || |||| || ||||||| ||| || | ||||| Sbjct 1021159 AAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTTCCCAGTGG 1021218 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 || || | || | |||||| || || |||||||| || || || || || || || Sbjct 1021219 GCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGGCCTTCTTG 1021278 Query 47167 TACATATTCCATAT 47180 ||||| | ||| || Sbjct 1021279 TACATTTCCCAAAT 1021292 >seq21561 Length=15626 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||||| || |||||||| |||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| ||| |||||||| | ||| ||||| || ||||| || | |||||| Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | || ||| ||| | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||||| | || ||||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 105 bits (116), Expect = 9e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| |||||| | || ||||| ||||||||||| |||||| |||| |||| || Sbjct 4958 CTCTCTCTCATATCGAGTGTATAAGGTCTCAAATTCATCACCCCAACAATCAGCCAACCC 4899 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| | || || ||||| | ||| ||||||| |||| | || | || |||||| Sbjct 4898 AGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAAA 4839 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 76649 |||||||| | ||| |||||| ||| ||||||| || Sbjct 4838 TAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGG 4801 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| ||||| || | ||||| ||||||| ||| | |||| | ||| || | ||| || Sbjct 4458 ACCACCCTGGTCCACATATCGAGCAGTGTCATTGAAGACTCGAAGCATCGGGACAATCCC 4399 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||| ||| |||||||||||| ||||| || ||| | ||| Sbjct 4398 ATTTGATGTACCATTTGTCCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGA 4339 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| || | ||||| |||| || ||||| || Sbjct 4338 AACACCAATTCCTCCAGCAGATTTGCTTATAATTGCACACTCCTTCAGAGTATCATATAT 4279 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 |||||| || |||||||| |||| Sbjct 4278 GCCCTCAATGCTATCATCTTTCAT 4255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709354114736640