Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq12962 150 6e-32 >seq12962 Length=520891 Score = 150 bits (166), Expect = 6e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||| ||||| |||||||| ||||| || ||||| |||||||| | Sbjct 88921 GAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAG 88980 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 || | | | | ||||| ||||| ||||| || | || ||||||||||| Sbjct 88981 CAGGTTGAACTGCAGCGGGTCGAGGTCGGTGATCTTCAGCACCCACGCCACCAGCGAACC 89040 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 || ||||||| || || || || ||| | |||||||| |||| ||||| |||||| Sbjct 89041 CGCGCCCGAGCCGCGGCCCGGGCCCACCGGGATGCCGTTCTGCTTGCCCCAGTTGATGAA 89100 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 ||| || |||| |||||||||| ||||| |||| || |||||| | ||| | |||| Sbjct 89101 GTCCGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGATGATGACGTCCAGCTCG 89158 Score = 147 bits (162), Expect = 7e-31 Identities = 509/779 (65%), Gaps = 49/779 (6%) Strand=Plus/Plus Query 38837 GCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGG 38896 ||||| ||||||| ||| | ||| || ||| ||||||| ||| || | | ||| Sbjct 87586 GCCCTGGCCCACGCCCTTGATCGCGCCGAGACCGTAGCGGATTTCCTTCGGCTTGGTCGC 87645 Query 38897 GGTGAAGGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGACGTGAAGTCCCATCCGCCG 38956 ||| | || |||| | |||||| |||||||| ||| || || ||| ||| Sbjct 87646 CACGAACATGAAGTCCGAGGCGTTCACGTCCGGCGGCAGCACGGTGAGGCCGATC-GCCT 87704 Query 38957 TGC-CTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGG 39015 || |||| ||| | | || || ||||| ||| ||| |||| | || | | Sbjct 87705 TGGACTCGTCGATGAAGGTCACCGCCTTGTCGGTGTTGTCCATGTCCGACGAGATCGTCG 87764 Query 39016 CCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGAC 39075 | |||||| ||||||| |||||||||| |||||| | || || |||||| || || Sbjct 87765 CGGCCATGAACTCGGCGGGGTAGTGCGCCTTCAGCCAGGCGGTCTGGTAGGAGACCAGCG 87824 Query 39076 CGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCC 39135 |||| || || | ||||| |||||||||| |||| |||||||| | | || ||| Sbjct 87825 CGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTCTCCATCAGGTCGA 87884 Query 39136 ACAC--CGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTT 39193 | | || | | | || | | ||| | || | || ||| |||| |||| || Sbjct 87885 AGATTTCGTCGGCCTTGCCGCTGCTGAGCC-CGTCCTTGGC-CGCGCCCTCGCGGAACTT 87942 Query 39194 CACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTC 39253 || ||||| |||| ||||| |||||||||||||| || ||||| || ||||| Sbjct 87943 GGCGCGTTCCTTCGCCATCTCCTCGACTTTCTTCTTGCCCATCGCGCGGCGCAGCAGGTC 88002 Query 39254 GGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTA 39313 ||| || || |||| || ||| |||||| ||| || | ||||||||||||||| Sbjct 88003 GGCGCCGCCGAGCGTGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCTGGTA 88062 Query 39314 GATGACCAGCCCGTAGGTCGGCCCCAGGATC---TCGGCAAGCGGCTCCTCCACCTCGGG 39370 || | | ||||||||| ||||||| ||| | |||| ||||| Sbjct 88063 GACCATGATGCCGTAGGTCTCTTTCAGGATCGGTTCGACGCGCGG---------GTCGGG 88113 Query 39371 GTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCC 39430 || | | | | |||| | |||| |||||| || ||| || || Sbjct 88114 GTACA-CCACTTCCTCGC-----GGCCGTGCTTGCGCGCCACGAAGT-----TGGGA-AT 88161 Query 39431 CACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTC 39490 || | ||||||| || || |||||||||||| | | ||| ||| ||| |||||| ||| Sbjct 88162 CAGGTCCATCGGGCCGGGGCGGTACAGCGCGCCCAGCGCGATGAGGTCGTCGAAGCGGTC 88221 Query 39491 CGGCTTCAGCAGGCG-----GAGCAGTGAGC-GCATCGCGCCGCCG--TCGAGCTGGAAG 39542 ||||| |||| |||| || || |||| || ||| | |||| ||||||| Sbjct 88222 GGGCTT-----GGCGTCCTTCAGCA-TGCGCTGCAT-GC-CCGAGGATTCGAACTGGAAG 88273 Query 39543 ACCGAGAGCGTGTCGCCCCTGGCCAGCAGCT---CGTAGGTAGCAACGTCGTCCAGCGG 39598 | || || || | || |||| | | || ||||||| || ||||||||||||| Sbjct 88274 ATCGCGACGGTCTTCGCCTTGGCGAAGATCTCGGCGTAGGTGGCGGCGTCGTCCAGCGG 88332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159376799470656