Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq105965 105 1e-17 seq104593 105 1e-17 seq88022 105 1e-17 seq76231 105 1e-17 seq33759 105 1e-17 seq12229 105 1e-17 seq1181 105 1e-17 seq94118 104 5e-17 seq65955 100 6e-16 seq65759 100 6e-16 seq52005 100 6e-16 seq106732 98.7 2e-15 seq101843 98.7 2e-15 seq99853 98.7 2e-15 seq79754 98.7 2e-15 seq77972 98.7 2e-15 seq68763 98.7 2e-15 seq64278 98.7 2e-15 seq37891 98.7 2e-15 seq31917 98.7 2e-15 seq25840 98.7 2e-15 seq9724 98.7 2e-15 seq76038 96.9 7e-15 seq22467 91.5 3e-13 seq81832 87.8 4e-12 seq74040 87.8 4e-12 seq59974 87.8 4e-12 seq36033 87.8 4e-12 >seq105965 Length=3844 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1447 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1388 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 1387 CCCCACGATGGGC 1375 >seq104593 Length=8857 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 7411 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7470 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 7471 CCCCACGATGGGC 7483 >seq88022 Length=3630 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1447 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1388 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 1387 CCCCACGATGGGC 1375 >seq76231 Length=10912 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 9466 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9525 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 9526 CCCCACGATGGGC 9538 >seq33759 Length=6141 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 4695 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4754 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 4755 CCCCACGATGGGC 4767 >seq12229 Length=6988 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 5542 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5601 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 5602 CCCCACGATGGGC 5614 >seq1181 Length=4380 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 2934 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2993 Query 165769 CCCCACGATGGGC 165781 ||||||||||||| Sbjct 2994 CCCCACGATGGGC 3006 >seq94118 Length=7784 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4696 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4755 Query 165770 CCCACGATGGGC 165781 |||||||||||| Sbjct 4756 CCCACGATGGGC 4767 >seq65955 Length=8800 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 3206 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3147 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 3146 AGCCCCACGGTGGGC 3132 >seq65759 Length=14752 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 11547 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 11606 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 11607 AGCCCCACGGTGGGC 11621 >seq52005 Length=14185 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 10980 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 11039 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 11040 AGCCCCACGGTGGGC 11054 >seq106732 Length=7110 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4352 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4293 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4292 CCCACGGTGGGC 4281 >seq101843 Length=4891 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2230 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2171 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2170 CCCACGGTGGGC 2159 >seq99853 Length=10346 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7588 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7529 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7528 CCCACGGTGGGC 7517 >seq79754 Length=26805 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12161 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12102 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12101 CCCACGGTGGGC 12090 >seq77972 Length=8091 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2759 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2818 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2819 CCCACGGTGGGC 2830 >seq68763 Length=9521 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3118 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3177 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3178 CCCACGGTGGGC 3189 >seq64278 Length=2795 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2698 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2757 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2758 CCCACGGTGGGC 2769 >seq37891 Length=16614 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1223 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1282 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1283 CCCACGGTGGGC 1294 >seq31917 Length=9155 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9058 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9117 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9118 CCCACGGTGGGC 9129 >seq25840 Length=4704 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3705 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3646 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3645 CCCACGGTGGGC 3634 >seq9724 Length=13890 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9007 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9066 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9067 CCCACGGTGGGC 9078 >seq76038 Length=2572 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1238 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1297 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 1298 CCCACGGTGGG 1308 >seq22467 Length=7572 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1902 TGCCCGTTTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1843 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1842 CCCCACGGTGGGC 1830 >seq81832 Length=8082 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||| |||||||||| || || |||| || ||||||||| ||||||| Sbjct 3305 TGCCCGTTTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGTGTTCGAG 3246 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3245 CCCCACGGTGGGC 3233 >seq74040 Length=10141 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||| |||||||||| || || |||| || ||||||||| ||||||| Sbjct 7735 TGCCCGTTTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGTGTTCGAG 7676 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 7675 CCCCACGGTGGGC 7663 >seq59974 Length=14085 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||| |||||||||| || || |||| || ||||||||| ||||||| Sbjct 2407 TGCCCGTTTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGTGTTCGAG 2466 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2467 CCCCACGGTGGGC 2479 >seq36033 Length=22081 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||| |||||||||| || || |||| || ||||||||| ||||||| Sbjct 3305 TGCCCGTTTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGTGTTCGAG 3246 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3245 CCCCACGGTGGGC 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056373789410000