Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq88716 86.0 6e-12 seq24040 86.0 6e-12 >seq88716 Length=16829 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTAT 16481 ||||| || ||||| | |||||| | | ||||| |||| | | ||||||| | | Sbjct 15727 ATCGTCTCAATGGCATGAAACAACCTATGCTTTTCAGCTGAGT--CCTTTATATATGACT 15784 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 ||| ||| || || ||||| || |||||||||||||| ||||| ||||| || ||||||| Sbjct 15785 CAAGCAGCAAGCTATACATCTCAGAGTGTATGTTCTCAATGGCAATCTGGAAGCCATAGA 15844 Query 16542 A-GCATCGAGCCTCCGC 16557 | ||| || ||||| || Sbjct 15845 ATGCA-CGGGCCTCAGC 15860 >seq24040 Length=12015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTAT 16481 ||||| || ||||| | |||||| | | ||||| |||| | | ||||||| | | Sbjct 4839 ATCGTCTCAATGGCATGAAACAACCTATGCTTTTCAGCTGAGT--CCTTTATATATGACT 4896 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 ||| ||| || || ||||| || |||||||||||||| ||||| ||||| || ||||||| Sbjct 4897 CAAGCAGCAAGCTATACATCTCAGAGTGTATGTTCTCAATGGCAATCTGGAAGCCATAGA 4956 Query 16542 A-GCATCGAGCCTCCGC 16557 | ||| || ||||| || Sbjct 4957 ATGCA-CGGGCCTCAGC 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510730383240000