Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq43607 96.9 3e-15 seq43534 96.9 3e-15 >seq43607 Length=12364 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || ||||| || || ||||| |||||||||||||| | Sbjct 5683 ACATGAGCAATCATGCATGTCAAAAGGGAGTAAGATGCAATATTAAATGGCACTCCCAGA 5624 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||||| ||||| |||| ||||||| |||||| || |||| |||| Sbjct 5623 CCCATGTCAGCAGATCGCTGATACATTTGACATGACAGCTCACCAT 5578 >seq43534 Length=7047 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || ||||| || || ||||| |||||||||||||| | Sbjct 5060 ACATGAGCAATCATGCATGTCAAAAGGGAGTAAGATGCAATATTAAATGGCACTCCCAGA 5001 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||||| ||||| |||| ||||||| |||||| || |||| |||| Sbjct 5000 CCCATGTCAGCAGATCGCTGATACATTTGACATGACAGCTCACCAT 4955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360780105857000