Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq21431 89.7 4e-13 seq78223 86.0 5e-12 seq64505 82.4 7e-11 >seq21431 Length=3066 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | ||||| ||||| || ||||||||||| || ||| | | Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| ||||| || || | || ||||| Sbjct 448 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAG 507 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || ||| |||| ||| ||| | || ||||| ||| Sbjct 508 CAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAAT 567 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||| |||||||||||| |||| Sbjct 568 ATTCAGAAGGAGTCTACTCTTCACTTGGT 596 >seq78223 Length=3817 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | ||| ||| || ||||||||||||||||| ||||| || || || Sbjct 2354 GATAAGGAAGGCATCCCCCCAGACCAGCAAAGACTTATCTTTGCCGGCAAGCAGCTCGAG 2295 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | || || || || |||||||| || |||||||| ||| ||||| | Sbjct 2294 GATGGTCGCACTCTTGCAGACTATAACATTCAGAAAGAGTCTACTCTACACTTGGTGCTC 2235 Query 29175 CGATTACGAGGAGGG 29189 || |||| || ||| Sbjct 2234 CGCCTACGTGGTGGG 2220 >seq64505 Length=10574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||| || | || ||||||||||||||||| ||| Sbjct 3929 GACAAAGAAGGGATCCCACCTGATCAACAGAGGTTGATTTTTGCGGGCAAACAACTTGAA 3870 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| | || || ||||| ||||||||||| || |||||||| Sbjct 3869 GATGGCCGAACCCTTGCGGACTACAACATTCAGAAGGAGTCGACTCTTCA 3820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427777423085000