Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq95352 89.7 4e-13 seq21431 89.7 4e-13 seq97783 82.4 6e-11 seq25263 82.4 6e-11 >seq95352 Length=5640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| | ||||| ||||| || ||||||||||| || ||| | | Sbjct 34 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 93 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| |||||| ||||| || || | || |||||| Sbjct 94 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCAGATCAG 153 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||| ||| | ||| |||| |||||||| Sbjct 154 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACAAC 213 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || |||||||| || ||||| ||| Sbjct 214 ATCCAAAAGGAGTCGACTCTGCAC 237 >seq21431 Length=3066 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| | ||||| ||||| || ||||||||||| || ||| | | Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| |||||| ||||| || || | || ||||| Sbjct 448 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAG 507 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||| ||| ||| | || ||||| ||| Sbjct 508 CAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAAT 567 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| ||||| |||||||||||| |||| Sbjct 568 ATTCAGAAGGAGTCTACTCTTCACTTGGT 596 >seq97783 Length=4057 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | ||||| || |||||||| || ||| | | Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| || ||| ||||| || ||| | || ||||| Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || || ||| | || ||| ||| |||| || ||||| Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||| |||||||| ||| | ||| | |||||| | || || Sbjct 648 CATCCAGAAGGAGTCTACTCTCCACCTTGTGCTCCGATTAAGGGGTGG 601 >seq25263 Length=4349 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | ||||| || |||||||| || ||| | | Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| || ||| ||||| || ||| | || ||||| Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || || ||| | || ||| ||| |||| || ||||| Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||| ||||| || ||| ||||| | |||||| | || || Sbjct 648 CATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATTAAGGGGTGG 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410261095298000