Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq21431 122 1e-22 seq101539 118 2e-21 seq97783 113 7e-20 seq83573 113 7e-20 seq25263 113 7e-20 seq95352 109 8e-19 seq78223 107 3e-18 >seq21431 Length=3066 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | || || | || || ||||| || ||| | ||| | || ||| Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTC- 446 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | || ||||| || ||||| || || || ||||| ||||| Sbjct 447 TGATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCA 506 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || ||||| || ||| ||||||| | | ||||||||| Sbjct 507 GCAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAA 566 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||| || || || ||| | || |||||| | || | || |||||| Sbjct 567 TATTCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGCCTTCGTGGTGGT 615 >seq101539 Length=5526 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || || || || || | ||| |||| ||| Sbjct 2217 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTC 2158 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| |||| | ||| || ||||||||||| ||||| || ||||| |||| Sbjct 2157 C-GACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATC 2099 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || |||||||| || || || |||||| | ||||| | | ||||| | Sbjct 2098 AGCAGAGGTTGATCTTTGCAGGTAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACA 2039 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | ||||| || || || || |||| |||||| | ||| | || || || Sbjct 2038 ACATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGG 1990 >seq97783 Length=4057 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || || || ||||| || | || | || ||| Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| |||| | || |||||||| ||||| || || || ||||| || | Sbjct 312 G-GATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACC 254 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| ||||||||||| ||||| || || ||| | || || | | |||||||| Sbjct 253 AGCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATA 194 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| || || || || || | ||| ||||| | ||| |||| ||||| Sbjct 193 ATATACAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTACGTGGTGG 145 Score = 89.7 bits (98), Expect = 8e-13 Identities = 168/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || || || || || | ||| ||||| Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| ||||||||||| || |||||||| || ||||| Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || ||| | |||||| | || || | | || || || Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || || || || ||| | || | || | || ||| | ||||| || | | ||| Sbjct 648 CATCCAGAAGGAGTCTACTCTCCACCTTGTGCTCCGATTAAGGGGTGGAATGCAGATATT 589 Query 124777 CATAAA 124782 | |||| Sbjct 588 CGTAAA 583 >seq83573 Length=2953 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || || || ||||| || | || | || ||| Sbjct 2582 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 2641 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| |||| | || |||||||| ||||| || || || ||||| || | Sbjct 2642 G-GATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACC 2700 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| ||||||||||| ||||| || || ||| | || || | | |||||||| Sbjct 2701 AGCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATA 2760 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| || || || || || | ||| ||||| | ||| |||| ||||| Sbjct 2761 ATATACAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTACGTGGTGG 2809 >seq25263 Length=4349 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || || || ||||| || | || | || ||| Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| |||| | || |||||||| ||||| || || || ||||| || | Sbjct 312 G-GATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACC 254 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| ||||||||||| ||||| || || ||| | || || | | |||||||| Sbjct 253 AGCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATA 194 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||| || || || || || | ||| ||||| | ||| |||| ||||| Sbjct 193 ATATACAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTACGTGGTGG 145 Score = 89.7 bits (98), Expect = 8e-13 Identities = 168/246 (68%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || || || || || | ||| ||||| Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| ||||||||||| || |||||||| || ||||| Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || ||| | |||||| | || || | | || || || Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || || || || || | || |||| | || ||| | ||||| || | | ||| Sbjct 648 CATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATTAAGGGGTGGAATGCAGATATT 589 Query 124777 CATAAA 124782 | |||| Sbjct 588 CGTAAA 583 >seq95352 Length=5640 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | || || | || || ||||| || ||| | ||| | || ||| Sbjct 34 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTC- 92 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | || ||||| || ||||| || || || ||||| ||||| Sbjct 93 TGATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCAGATCA 152 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||||||||| ||||| |||||| | | || || | ||||| || Sbjct 153 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGGAGGACTTTGGCTGATTACAA 212 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| || || ||| |||| | || | ||| | || |||||| Sbjct 213 CATCCAAAAGGAGTCGACTCTGCACCTTGTCCTTCGTCTCCGTGGTGGT 261 >seq78223 Length=3817 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || || || || || | ||| |||| ||| Sbjct 2219 ATGCAGATTTTTGTCAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCC 2160 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||||||||| ||||| || ||||| ||||| Sbjct 2159 -GACACCATTGATAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGATCA 2101 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| ||||| || || |||||| | ||||| | | ||||| || Sbjct 2100 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACTCTGGCTGATTACAA 2041 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || || || || |||| |||||| | ||| | || || || Sbjct 2040 CATTCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTGCGTGGAGG 1993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754445577600000