Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq91609 134 2e-26 seq13002 118 1e-21 seq21431 107 2e-18 seq84028 102 9e-17 seq101539 95.1 1e-14 >seq91609 Length=4479 Score = 134 bits (148), Expect = 2e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || || | || ||||| ||||| || |||||| || || ||||| || || Sbjct 244 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 185 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 184 AAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 125 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || || | | | | |||||| |||||||| Sbjct 124 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCAC 65 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | ||||| ||||| || ||||| || ||||||||||| ||||||||| Sbjct 64 CTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTTT 13 >seq13002 Length=8172 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || || | || ||||| ||||| || |||||| || || ||||| || || Sbjct 5185 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 5126 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||||| |||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 5125 GAGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 5066 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || |||||||||| ||| || |||| ||| | | | ||||| ||| |||| Sbjct 5065 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCCA 5007 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || || ||||| || || || || || || ||||| Sbjct 5006 CCTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq21431 Length=3066 Score = 107 bits (118), Expect = 2e-18 Identities = 146/197 (74%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || || ||| | || || ||||||||||||||||| Sbjct 351 CTCCTTCTGGATATTGTAGTCGGCAAGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAA 292 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | | ||||||||| ||| | || | |||| || Sbjct 291 GATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCC-TGAATCTTAGCCTTGA-CG 234 Query 43111 TCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||| |||| ||||| |||| |||||||| || || || || ||| Sbjct 233 TTGTCAATGGTGTCTGAGCTC---TCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 177 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 176 TTCACGAAGATCTGCAT 160 >seq84028 Length=6065 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||||||||| || || || |||| || || ||||| || ||||| Sbjct 3369 CTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAA 3310 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | |||||||| | || | || ||| ||||| |||||| ||| | ||| Sbjct 3309 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTA-CGT 3251 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| |||||| || | ||||| || ||||| || || || || | Sbjct 3250 TGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCA 3191 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 3190 CAAAGATCTGCAT 3178 >seq101539 Length=5526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||| |||| || |||||| ||||| ||||||||||| Sbjct 1989 TCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGC 2048 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || | ||||||||| || || || | | |||||| || | || Sbjct 2049 CAGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGGTGG 2108 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 43131 | | ||||| | | ||| | |||| ||| | | | | ||||| |||| | Sbjct 2109 GATCCCTTCCTTAT-CTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTC---T 2164 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || | |||||||| || || || || ||||| ||||||||||||||| Sbjct 2165 CAACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571052793960000