Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq21431 95.1 2e-14 seq97783 84.2 3e-11 seq83573 84.2 3e-11 seq25263 84.2 3e-11 >seq21431 Length=3066 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||| || | |||||| || || ||||||||||||| | Sbjct 614 CCACCACGAAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATCTGCA 555 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | |||||| ||||| || || ||||| ||||| || ||||||||||| || Sbjct 554 AGGGTTCGACCATCATCCAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 495 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 494 ATCCCCTCCTTATCCTG 478 >seq97783 Length=4057 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || || || || |||||||||||||| |||||| | || ||| || Sbjct 163 ACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGGCCATCTTCC 222 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || |||||||||| || ||||| ||||| || || || || ||||| || Sbjct 223 AACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTG 281 >seq83573 Length=2953 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || || || || |||||||||||||| |||||| | || ||| || Sbjct 2791 ACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGGCCATCTTCC 2732 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || |||||||||| || ||||| ||||| || || || || ||||| || Sbjct 2731 AACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTG 2673 >seq25263 Length=4349 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || || || || |||||||||||||| |||||| | || ||| || Sbjct 163 ACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGGCCATCTTCC 222 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || |||||||||| || ||||| ||||| || || || || ||||| || Sbjct 223 AACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTG 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742531933440000