Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq91609 136 3e-27 seq13002 123 2e-23 seq97783 118 7e-22 seq101539 109 4e-19 seq83573 109 4e-19 seq78223 96.9 2e-15 seq6667 96.9 2e-15 seq100029 95.1 8e-15 seq25263 87.8 1e-12 seq21431 86.0 4e-12 seq84028 84.2 1e-11 >seq91609 Length=4479 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || |||||||||||| || | || || ||||| ||||||||||||| Sbjct 244 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 185 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || ||| |||| |||| |||||| || |||||||| || ||||||||||| | ||| Sbjct 184 AAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 125 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||| ||| | || | | |||| || | ||||| | Sbjct 124 G-ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCA 66 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 65 CCTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCAT 17 >seq13002 Length=8172 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || |||||||||||| || | || || ||||| ||||||||||||| Sbjct 5185 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 5126 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGG 34280 ||| || |||| |||| |||||| || |||||||| || |||||||||| || ||| Sbjct 5125 GAGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 5066 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||| ||| | | | | || | || | ||| || | Sbjct 5065 G-ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCA 5007 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||| ||||| || || || || || |||||||| || ||||||||| Sbjct 5006 CCTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCATC 4957 >seq97783 Length=4057 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| |||||||| ||||||||||||| || ||| |||| Sbjct 844 AGCACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCC 903 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || ||||||| ||||||||| ||| | | |||||||| Sbjct 904 TCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 963 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| ||||| || | ||||| || Sbjct 964 TGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTC 1023 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| ||||||||||||||||||||| Sbjct 1024 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATC 1056 >seq101539 Length=5526 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||||| || |||| | || Sbjct 3107 AGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCATCC 3166 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || || || ||||||| |||||||| ||| | | |||||||| Sbjct 3167 TCGAGCTGTTTTCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 3226 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| ||||| || | ||||| || Sbjct 3227 TGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTC 3286 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| ||||||||||||||||||||| Sbjct 3287 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATC 3319 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||||||||||||||| | || ||| | || Sbjct 2649 AGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCAAGAGTACGACCATCC 2708 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||||| ||||||||| ||| | | |||||||| Sbjct 2709 TCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCC 2768 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || | |||||||| Sbjct 2769 TGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTC 2828 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || ||||| ||||||||||| Sbjct 2829 TTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 2860 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 |||||| || ||||| | || |||| ||| | || || ||||| |||||||| || Sbjct 1986 GAATCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATC 2045 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGA 34277 | ||| ||| | || ||||||||||| ||||| || || | || |||||| | || Sbjct 2046 AGCCAGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGG 2105 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 ||| | || ||||| || ||| |||||||| | || | || | |||| Sbjct 2106 TGGGATCCCT-TCCTTATCTTGAATC-TTTGCTTTCACATTATCAATGGTGTCGGAGCTC 2163 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| |||||||| || || || || || || |||||||| ||||| Sbjct 2164 TCAACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 2216 >seq83573 Length=2953 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||||| || ||| | || Sbjct 2338 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCT 2279 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| |||||||| ||||||| |||||||| || | || ||| ||||| Sbjct 2278 TCGAGTTGCTTTCCTGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCT 2219 Query 34298 GCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| || |||| | | | || | |||| ||| || || | ||||| || Sbjct 2218 TGGAT-TTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGT 2160 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| ||||||||||||||||||||| Sbjct 2159 CTTGCCAGTGAGGGTTTTCACAAAGATCTGCATC 2126 >seq78223 Length=3817 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||||| |||| |||||||| ||||| ||||| | || || | || Sbjct 2236 AGCACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCAAGAGTGCGACCATCC 2295 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || || | |||||||| ||| | || ||||| || Sbjct 2296 TCGAGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGGATGCCTTCCTTATCT 2355 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | |||||| || | ||||| || Sbjct 2356 TGGATCTTGGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTGATTGTC 2415 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| ||||||||||||||||||||| Sbjct 2416 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATC 2448 >seq6667 Length=12399 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||| || ||||||||| | || || | || Sbjct 10906 AGCACCAAGTGGAGGGTTGATTCTTTTTGAGTGTTGTAGTGAGCAAGGACCCGATGATCC 10965 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| ||||| ||||||||||| |||||||| || |||| ||||||||| Sbjct 10966 TCGAGTTGCTTTCCTGCAAAAATGAGCCGTTGCTGGTCCGGTGGGACGCCCTCCTTGTCC 11025 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGA-ATCGGTCGA---TTCGACGTCCACCGTGAT 34353 || |||||||||| | | |||| | | | || |||||| || | ||||| Sbjct 11026 CAGAT-TTTTGCTTTAAC---GTTGTCGACAGTGTTGGAGCTTTCGACCTCAAGGGTGAT 11081 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| ||||||||||||| ||| ||||||||| Sbjct 11082 GGACTTGCCCGTGAGAGTTTTCATAAATATCTGCATC 11118 >seq100029 Length=1069 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||||||||||||||| | || ||| | || Sbjct 371 AGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCAAGAGTACGACCATCC 312 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| ||||||| ||||||||| ||| | | |||||||| Sbjct 311 TCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCC 252 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || | |||||||| Sbjct 251 TGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTC 192 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || ||||| ||||||||||| Sbjct 191 TTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 160 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||| || ||| | || Sbjct 599 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 540 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || |||||||||| ||||||||| ||| | || |||||| || Sbjct 539 TCGAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 480 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || | || ||||| Sbjct 479 TGGATCTTAGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTTATGGTC 420 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||||||||| Sbjct 419 TTTCCTGTGAGCGTCTTGACGAAGATCTGCAT 388 >seq25263 Length=4349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||||| || || | || Sbjct 844 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCC 903 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || ||||||| ||||||||| || | | || ||||| Sbjct 904 TCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCC 963 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | || | | |||| || | ||| || || | |||||||| Sbjct 964 TGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAACTTTCCACCTCAAGGGTGATGGTC 1023 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || ||||||||||| ||||||||| Sbjct 1024 TTACCGGTAAGCGTTTTCACAAAAATCTGCATC 1056 >seq21431 Length=3066 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || | ||| || ||||| || |||||||||| Sbjct 386 CCGCCACGTAGACGAAGGACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGCA 327 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| ||||||| ||||||||| ||| Sbjct 326 AGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGG 267 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | || || Sbjct 266 ATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACC 207 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || |||||||| || ||||| ||||||||||| Sbjct 206 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 160 >seq84028 Length=6065 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||| || | || ||| |||| || | ||||| || ||||| Sbjct 3368 TCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAAG 3309 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||||| |||||||| || | || ||| ||||| || ||| ||||| | | Sbjct 3308 ATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGAT-TTTGGCTTTTACGTT 3250 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||| || || | ||||| || ||||| ||||| |||||||| Sbjct 3249 GTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCAC 3190 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 3189 AAAGATCTGCATC 3177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322650693920000