Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24040 107 2e-18 seq105781 104 2e-17 seq89506 104 2e-17 seq69626 104 2e-17 seq32325 104 2e-17 seq88716 100 3e-16 >seq24040 Length=12015 Score = 107 bits (118), Expect = 2e-18 Identities = 256/379 (68%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || | | || || || | ||| ||||| ||||||||||| || |||||| Sbjct 3987 GACATTACAGAAGTCGTCTGGTACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTTCCT 4046 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | || |||| ||||| ||||||| || |||| | | ||| |||| | | Sbjct 4047 TGCAAACTAATAAGCTCCATCTAATCAAACGGGTTTTGCGCATCATACAATTTCCCATAG 4106 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| || | ||| ||||| |||||||||| ||||||| |||| ||||||| Sbjct 4107 CCCAAAGCCGATGATAGCCTATCAACCACAAATTCAATATACTTACTCATCAAATCACCA 4166 Query 16109 TTCATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| | || ||| || | || || || ||| | ||| || | ||| Sbjct 4167 TTCATTCCCA-CAACGGCACACGGTAAAGCATCACATATAAATTCCCATTCAATCTCAAC 4225 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAAG-TGTTTA 16225 || | | || |||||||| ||| | || ||| || || | ||| | || ||| Sbjct 4226 TGCATAAGATATAATATCTCTAACT-CTCTCTTT-ACTCAGCTTGTTATTTAGCAATTTG 4283 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||||||||||||||| ||||| ||||| || | || ||||| ||||| Sbjct 4284 TAGAGCAAACAAGCAAAATCACAGTGCAAGCCTTCATCTCGGGAGATCAACTCATTTGAG 4343 Query 16286 AATGTAAGACCTGGCATTA 16304 || || || || ||||||| Sbjct 4344 AAGGTGAGTCCAGGCATTA 4362 >seq105781 Length=11737 Score = 104 bits (114), Expect = 2e-17 Identities = 255/379 (67%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || | | || || || | ||| ||||| ||||||||||| || |||||| Sbjct 9097 GACATTACAGAAGTCGTCTGGTACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTTCCT 9156 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | || |||| ||||| ||||||| || |||| | | ||| |||| | | Sbjct 9157 TGCAAACTAATAAGCTCCATCTAATCAAACGGGTTTTGCGCATCATACAATTTCCCATAG 9216 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| || | ||| ||||| |||||||||| ||||||| |||| ||||||| Sbjct 9217 CCCAAAGCCGATGATAGCCTATCAACCACAAATTCAATATACTTACTCATCAAATCACCA 9276 Query 16109 TTCATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| | || ||| || | || || || ||| | ||| || | ||| Sbjct 9277 TTCATTCCCA-CAACGGCACACGGTAAAGCATCACATATAAATTCCCATTCAATCTCAAC 9335 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAAG-TGTTTA 16225 || | | || |||||||| ||| | || ||| || || | ||| | || ||| Sbjct 9336 TGCATAAGATATAATATCTCTAACT-CTCTCTTT-ACTCAGCTTGTTATTTAGCAATTTG 9393 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||||||||||||||| ||||| ||||| || | || ||||| || || Sbjct 9394 TAGAGCAAACAAGCAAAATCACAGTGCAAGCCTTCATCTCGGGAAATCAACTCATTCGAG 9453 Query 16286 AATGTAAGACCTGGCATTA 16304 || || || |||||| ||| Sbjct 9454 AAAGTGAGCCCTGGCTTTA 9472 >seq89506 Length=9827 Score = 104 bits (114), Expect = 2e-17 Identities = 255/379 (67%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || | | || || || | ||| ||||| ||||||||||| || |||||| Sbjct 2641 GACATTACAGAAGTCGTCTGGTACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTTCCT 2582 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | || |||| ||||| ||||||| || |||| | | ||| |||| | | Sbjct 2581 TGCAAACTAATAAGCTCCATCTAATCAAACGGGTTTTGCGCATCATACAATTTCCCATAG 2522 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| || | ||| ||||| |||||||||| ||||||| |||| ||||||| Sbjct 2521 CCCAAAGCCGATGATAGCCTATCAACCACAAATTCAATATACTTACTCATCAAATCACCA 2462 Query 16109 TTCATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| | || ||| || | || || || ||| | ||| || | ||| Sbjct 2461 TTCATTCCCA-CAACGGCACACGGTAAAGCATCACATATAAATTCCCATTCAATCTCAAC 2403 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAAG-TGTTTA 16225 || | | || |||||||| ||| | || ||| || || | ||| | || ||| Sbjct 2402 TGCATAAGATATAATATCTCTAACT-CTCTCTTT-ACTCAGCTTGTTATTTAGCAATTTG 2345 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||||||||||||||| ||||| ||||| || | || ||||| || || Sbjct 2344 TAGAGCAAACAAGCAAAATCACAGTGCAAGCCTTCATCTCGGGAAATCAACTCATTCGAG 2285 Query 16286 AATGTAAGACCTGGCATTA 16304 || || || |||||| ||| Sbjct 2284 AAAGTGAGCCCTGGCTTTA 2266 >seq69626 Length=16037 Score = 104 bits (114), Expect = 2e-17 Identities = 255/379 (67%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || | | || || || | ||| ||||| ||||||||||| || |||||| Sbjct 13397 GACATTACAGAAGTCGTCTGGTACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTTCCT 13456 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | || |||| ||||| ||||||| || |||| | | ||| |||| | | Sbjct 13457 TGCAAACTAATAAGCTCCATCTAATCAAACGGGTTTTGCGCATCATACAATTTCCCATAG 13516 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| || | ||| ||||| |||||||||| ||||||| |||| ||||||| Sbjct 13517 CCCAAAGCCGATGATAGCCTATCAACCACAAATTCAATATACTTACTCATCAAATCACCA 13576 Query 16109 TTCATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| | || ||| || | || || || ||| | ||| || | ||| Sbjct 13577 TTCATTCCCA-CAACGGCACACGGTAAAGCATCACATATAAATTCCCATTCAATCTCAAC 13635 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAAG-TGTTTA 16225 || | | || |||||||| ||| | || ||| || || | ||| | || ||| Sbjct 13636 TGCATAAGATATAATATCTCTAACT-CTCTCTTT-ACTCAGCTTGTTATTTAGCAATTTG 13693 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||||||||||||||| ||||| ||||| || | || ||||| || || Sbjct 13694 TAGAGCAAACAAGCAAAATCACAGTGCAAGCCTTCATCTCGGGAAATCAACTCATTCGAG 13753 Query 16286 AATGTAAGACCTGGCATTA 16304 || || || |||||| ||| Sbjct 13754 AAAGTGAGCCCTGGCTTTA 13772 >seq32325 Length=15193 Score = 104 bits (114), Expect = 2e-17 Identities = 255/379 (67%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || || | | || || || | ||| ||||| ||||||||||| || |||||| Sbjct 4457 GACATTACAGAAGTCGTCTGGTACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTTCCT 4398 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | || |||| ||||| ||||||| || |||| | | ||| |||| | | Sbjct 4397 TGCAAACTAATAAGCTCCATCTAATCAAACGGGTTTTGCGCATCATACAATTTCCCATAG 4338 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| || | ||| ||||| |||||||||| ||||||| |||| ||||||| Sbjct 4337 CCCAAAGCCGATGATAGCCTATCAACCACAAATTCAATATACTTACTCATCAAATCACCA 4278 Query 16109 TTCATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||||| | || ||| || | || || || ||| | ||| || | ||| Sbjct 4277 TTCATTCCCA-CAACGGCACACGGTAAAGCATCACATATAAATTCCCATTCAATCTCAAC 4219 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAAG-TGTTTA 16225 || | | || |||||||| ||| | || ||| || || | ||| | || ||| Sbjct 4218 TGCATAAGATATAATATCTCTAACT-CTCTCTTT-ACTCAGCTTGTTATTTAGCAATTTG 4161 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||||||||||||||| ||||| ||||| || | || ||||| || || Sbjct 4160 TAGAGCAAACAAGCAAAATCACAGTGCAAGCCTTCATCTCGGGAAATCAACTCATTCGAG 4101 Query 16286 AATGTAAGACCTGGCATTA 16304 || || || |||||| ||| Sbjct 4100 AAAGTGAGCCCTGGCTTTA 4082 >seq88716 Length=16829 Score = 100 bits (110), Expect = 3e-16 Identities = 252/377 (67%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || || || || || | || ||||||||||| |||||||| || || | Sbjct 14877 CATAACAGAGGCCTTCTGGTACTCTCCCACCCTCTTTTCAAAAAAATTTGTCTTCCCCTG 14936 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCC 16050 || ||| ||||| ||||||| ||||| | | | ||| |||| || |||| Sbjct 14937 CAAACTAATCAACTCCATCCAATCAAACGGATTCTGCGCATCATACAATTTTCCGTATCC 14996 Query 16051 CAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTT 16110 |||| || ||||| ||||| ||||||||||| || |||| |||| | ||||| || Sbjct 14997 CAATGCCCCCAATAGCCTATCAGCCACAAATTCAATGTACTTGCTCATCAGATCACCATT 15056 Query 16111 CATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||||| | || ||| || | || || || ||| | | | || || | ||| | Sbjct 15057 CATTCCCA-CAAGAGCACATGGCAAAGCATCACATACAAACTCTCTCTCAATCTCAACTG 15115 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAAG-TGTTTAAA 16227 | ||| | || |||||||| | | || || || | ||| |||| | | | Sbjct 15116 CATCAGACACAATCTCTCTTAC--CCTTTCTTCACTAAGTTTGTTATTAAGCAACTCATA 15173 Query 16228 CATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA 16287 | | ||||||||| ||||| ||||| ||||| || | || ||||| ||||| || Sbjct 15174 GAGCAAACAAGCAAAGTCACAGTGCAAGCCTTCATCTCGGGAGATCAACTCATTTGAGAA 15233 Query 16288 TGTAAGACCTGGCATTA 16304 || || || ||||||| Sbjct 15234 GGTGAGTCCAGGCATTA 15250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461893390200000