Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq43607 96.9 3e-15 seq43534 96.9 3e-15 >seq43607 Length=12364 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || |||||||| || ||| ||| |||| |||||||||||||| ||||| ||||| ||| Sbjct 5562 CAGTTTTACGTAGCCAATGGTGAGCTGTCATGTCAAATGTATCAGCGATCTGCTGACATG 5621 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || || || ||||||||| ||| | || | || | |||||||| ||| Sbjct 5622 GGTCTGGGAGTGCCATTTAATATTGCATCTTACTCCCTTTTGACATGCATGATTGCTCAT 5681 Query 20551 GTT 20553 ||| Sbjct 5682 GTT 5684 >seq43534 Length=7047 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || |||||||| || ||| ||| |||| |||||||||||||| ||||| ||||| ||| Sbjct 4939 CAGTTTTACGTAGCCAATGGTGAGCTGTCATGTCAAATGTATCAGCGATCTGCTGACATG 4998 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || || || ||||||||| ||| | || | || | |||||||| ||| Sbjct 4999 GGTCTGGGAGTGCCATTTAATATTGCATCTTACTCCCTTTTGACATGCATGATTGCTCAT 5058 Query 20551 GTT 20553 ||| Sbjct 5059 GTT 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398663439115000