Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq78223 93.3 3e-14 seq101539 86.0 5e-12 >seq78223 Length=3817 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||||||| || || | || |||| ||| || || || || || ||||||||||| || | Sbjct 1991 ATCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAG 2050 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 ||| ||| | ||| ||||| || || || ||| |||| | || || |||||| | Sbjct 2051 CCAGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTG 2110 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | | ||||||||||| ||| | |||| || || | ||| ||||| | ||| Sbjct 2111 GGATCCCTTCCTTATCTTGAATCT-TTGCTTTCACATTATCAATGGTGTCGGAGCTCTCA 2169 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || ||||| || || |||||||| ||||| Sbjct 2170 ACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| ||| || || || ||||| |||||||| ||||| || Sbjct 2221 CCACCACGTAGGCGGAGCACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCA 2280 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || ||||| ||| ||||||||||||| || || ||| Sbjct 2281 AGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGG 2340 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | ||| || | ||| ||||| | ||| Sbjct 2341 ATGCCTTCCTTATCTTGGATCTTGGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCGACC 2400 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | ||||| ||||| || ||||| Sbjct 2401 TCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2447 >seq101539 Length=5526 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||||||| || || | || |||| ||| || || || || || ||||||||||| || | Sbjct 1988 ATCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAG 2047 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 ||| ||| | ||| ||||| || || || ||| |||| | || || |||||| | Sbjct 2048 CCAGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGGTG 2107 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | | ||||||||||| ||| | |||| || || | ||| ||||| | ||| Sbjct 2108 GGATCCCTTCCTTATCTTGAATCT-TTGCTTTCACATTATCAATGGTGTCGGAGCTCTCA 2166 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| | || || || | || || ||||| ||||||||| Sbjct 2167 ACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 2217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378849311715000