Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13002 116 3e-21 seq91609 114 1e-20 seq100029 91.5 1e-13 seq101539 86.0 6e-12 seq97783 82.4 7e-11 seq83573 82.4 7e-11 seq25263 82.4 7e-11 >seq13002 Length=8172 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||| || || ||||||||| | || || || |||| Sbjct 4958 ATGCAGATATTCGTGAAAACCCTGACGGGGAAGACGATCACCCTGGAGGTGGAGTCGTCG 5017 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | ||||| |||||| Sbjct 5018 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5077 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| |||| ||| ||| | ||| || ||| Sbjct 5078 CAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGACGGACGCTCGCCGACTACAAC 5137 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| || |||||||| || || ||||||| || Sbjct 5138 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGG 5184 >seq91609 Length=4479 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || ||||| || || ||||| |||||||||||| | || || ||| | Sbjct 13 AAAAATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGAATC 72 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || | || ||||||||| ||| | ||||| || Sbjct 73 TTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 132 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || ||||| || || ||| |||| ||| || | ||| || Sbjct 133 CCAGCAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTA 192 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || ||||| || |||||||| || || ||||||| || Sbjct 193 CAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGG 243 >seq100029 Length=1069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| |||| || || || Sbjct 159 CATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTC 218 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||||||| | || || ||||| Sbjct 219 AGACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 278 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| | || || | ||| | || || || Sbjct 279 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAA 338 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || |||||| |||| || | ||||||| |||| Sbjct 339 CATACAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGGTA 388 >seq101539 Length=5526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| |||| || || || Sbjct 2861 CATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTC 2802 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||||||| | || || ||||| Sbjct 2801 AGACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 2742 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| | || || | ||| | || || || Sbjct 2741 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAA 2682 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || |||||| |||| || | ||||||| |||| Sbjct 2681 CATACAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGGTA 2632 >seq97783 Length=4057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||||||||| ||| | || ||||| ||| Sbjct 599 ATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTCC 540 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| || || | || || |||||| Sbjct 539 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 480 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| | || ||| | || | ||||| || Sbjct 479 CAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAAT 420 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || || ||||| |||| || |||| Sbjct 419 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACT 382 >seq83573 Length=2953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||||||||| ||| | || ||||| ||| Sbjct 2355 ATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTCC 2414 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| || || | || || |||||| Sbjct 2415 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 2474 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| | || ||| | || | ||||| || Sbjct 2475 CAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAAT 2534 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || || ||||| |||| || |||| Sbjct 2535 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACT 2572 >seq25263 Length=4349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||| ||||||||||| ||| | || ||||| ||| Sbjct 599 ATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTCC 540 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| || || | || || |||||| Sbjct 539 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 480 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| | || ||| | || | ||||| || Sbjct 479 CAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAAT 420 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || || ||||| |||| || |||| Sbjct 419 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGACT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445170187440000