Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12357 87.8 2e-12 seq10414 87.8 2e-12 seq88716 86.0 8e-12 seq24040 86.0 8e-12 >seq12357 Length=26847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | || | || |||| ||| |||| | || ||| ||||| |||||| Sbjct 18130 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 18071 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || || || ||||| || || |||||||| ||| | || || ||||| ||| || Sbjct 18070 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 18011 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || || || | ||| ||| || || ||||||||||| Sbjct 18010 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 17951 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || || || || ||||| ||||| | ||||| ||||| Sbjct 17950 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 17910 >seq10414 Length=13365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | || | || |||| ||| |||| | || ||| ||||| |||||| Sbjct 4648 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 4589 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || || || ||||| || || |||||||| ||| | || || ||||| ||| || Sbjct 4588 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 4529 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || || || | ||| ||| || || ||||||||||| Sbjct 4528 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 4469 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || || || || ||||| ||||| | ||||| ||||| Sbjct 4468 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 4428 >seq88716 Length=16829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/277 (68%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 36282 |||| || | ||| || ||||| || || | | || | | ||| ||| || |||||||| Sbjct 15574 ATTATACCTCTCTTCTTCAGCCAGAAGATAG-CACAGAAGCTCCCAGAGAAAAAAATTCC 15632 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTATCC 36338 ||| || |||||| ||||||| ||||| || ||| | ||| ||| |||| Sbjct 15633 TTCCACACACGCAAACGCAATAATCCTCTCAGCA-AACGATTCCCCAC---CATTGATCC 15688 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 || | ||||| | |||||||| | ||||| || || ||||| || |||| ||| | Sbjct 15689 ACCTCAACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACA 15748 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | |||||| || || | ||||| |||| || | |||||||| || | Sbjct 15749 ACCTATGCTTTTCAGCTGAGTCCTTTATATATGACTCAAGCAGCAAGCTATACATCTCAG 15808 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 | || ||||| |||||||| || || || || ||||| Sbjct 15809 AGTGTATGTTCTCAATGGCAATCTGGAAGCCATAGAA 15845 >seq24040 Length=12015 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/277 (68%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 36282 |||| || | ||| || ||||| || || | | || | | ||| ||| || |||||||| Sbjct 4686 ATTATACCTCTCTTCTTCAGCCAGAAGATAG-CACAGAAGCTCCCAGAGAAAAAAATTCC 4744 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTATCC 36338 ||| || |||||| ||||||| ||||| || ||| | ||| ||| |||| Sbjct 4745 TTCCACACACGCAAACGCAATAATCCTCTCAGCA-AACGATTCCCCAC---CATTGATCC 4800 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 || | ||||| | |||||||| | ||||| || || ||||| || |||| ||| | Sbjct 4801 ACCTCAACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACA 4860 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | |||||| || || | ||||| |||| || | |||||||| || | Sbjct 4861 ACCTATGCTTTTCAGCTGAGTCCTTTATATATGACTCAAGCAGCAAGCTATACATCTCAG 4920 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 | || ||||| |||||||| || || || || ||||| Sbjct 4921 AGTGTATGTTCTCAATGGCAATCTGGAAGCCATAGAA 4957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657292493880000