Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq101539 89.7 5e-13 seq97783 89.7 5e-13 seq78223 86.0 6e-12 seq83573 84.2 2e-11 seq25263 84.2 2e-11 >seq101539 Length=5526 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || || ||||| || ||| | || | || |||||||| Sbjct 3115 GTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCATCCTCGAGCTG 3174 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| |||||| |||| || | |||||| || || || || ||||| ||||| ||| || Sbjct 3175 TTTTCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTT 3234 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| | ||| ||||||| ||| | |||||||| || Sbjct 3235 AGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTTGCCAGT 3294 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || || ||||| Sbjct 3295 GAGGGTTTTCACAAAGATCTGCAT 3318 >seq97783 Length=4057 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||||||||||| || ||||| || ||| | |||| ||| ||| Sbjct 847 ACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCG 906 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||| || | ||||| || || || || ||||| ||||| | Sbjct 907 AGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 966 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||||| | ||| ||||||| ||| | |||||| Sbjct 967 ATCTTAGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTTG 1026 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| || || || ||||| Sbjct 1027 CCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || || || ||||| | |||| ||| || Sbjct 391 ACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTCA 450 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| | || || | ||||| || || || || || |||||||| | Sbjct 451 AGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 510 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | || |||| | ||| ||||||| ||| | ||| ||| Sbjct 511 ATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTTG 570 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || ||||||||||| ||||| Sbjct 571 CCAGTCAAGGTCTTTACGAATATCTGCAT 599 >seq78223 Length=3817 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| || | || ||||| | ||||||||||| ||||||||||| || Sbjct 2221 CCACCACGTAGGCGGAGCACCAAGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGCA 2280 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || || ||| |||| || | |||||| || || || Sbjct 2281 AGAGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATAAGTCTTTGCTGGTCTGGGGGG 2340 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | ||||| | | || ||| Sbjct 2341 ATGCCTTCCTTATCTTGGATCTTGGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCGACC 2400 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| || | ||||| || || || ||||| Sbjct 2401 TCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2447 >seq83573 Length=2953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || || || ||||| | |||| ||| || Sbjct 2563 ACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTCA 2504 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| | || || | ||||| || || || || || |||||||| | Sbjct 2503 AGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 2444 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | || |||| | ||| ||||||| ||| | ||| ||| Sbjct 2443 ATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTTG 2384 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || ||||||||||| ||||| Sbjct 2383 CCAGTCAAGGTCTTTACGAATATCTGCAT 2355 >seq25263 Length=4349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || || || ||||| | |||| ||| || Sbjct 391 ACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTCA 450 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| | || || | ||||| || || || || || |||||||| | Sbjct 451 AGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 510 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | || |||| | ||| ||||||| ||| | ||| ||| Sbjct 511 ATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTTG 570 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || ||||||||||| ||||| Sbjct 571 CCAGTCAAGGTCTTTACGAATATCTGCAT 599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||| || || ||||| || ||| | |||| || ||| Sbjct 847 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCG 906 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||| || | ||||| || || || || ||||||||||| | Sbjct 907 AGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCCTGG 966 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| || | | || | ||||| | |||||||||| ||| | ||||| Sbjct 967 ATTTTAGCCTTGACATTGTCGATCGTGTCAGAACTTTCCACCTCAAGGGTGATGGTCTTA 1026 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | |||||| || || || ||||| Sbjct 1027 CCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495400514400000