Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12357 87.8 2e-12 seq10414 87.8 2e-12 seq88716 86.0 8e-12 seq24040 86.0 8e-12 >seq12357 Length=26847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | || |||| ||| |||| | || ||| ||||| |||||| Sbjct 18130 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 18071 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || | ||||| || || |||||||| ||| | || || |||||| ||| || Sbjct 18070 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 18011 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || || || | ||| ||| || || ||||||||||| Sbjct 18010 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 17951 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || || || || ||||| ||||| | ||||| ||||| Sbjct 17950 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 17910 >seq10414 Length=13365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | || |||| ||| |||| | || ||| ||||| |||||| Sbjct 4648 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 4589 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || | ||||| || || |||||||| ||| | || || |||||| ||| || Sbjct 4588 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 4529 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || || || | ||| ||| || || ||||||||||| Sbjct 4528 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 4469 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || || || || ||||| ||||| | ||||| ||||| Sbjct 4468 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 4428 >seq88716 Length=16829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 239/363 (66%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || ||||| | ||||| |||||||| ||||| || | ||| || Sbjct 14890 TTCTGGTACTCTCCCACCCTCTTTTCAAAAAAATTTGTCTTCCCCTGCAAACTAATCAAC 14949 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| ||| ||| | |||| |||||||| | | Sbjct 14950 TCCATCCAATCAAACGGATTCTGCGCATCATACAATTTTCCGTATCCCAATGCCCCCAAT 15009 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | ||||| || | ||||| || || | |||||| |||| ||||||||| | ||| Sbjct 15010 AGCCTATCAGCCACAAATTCAATGTACTTGCTCATCAGATCACCATTCATTCCCACAAGA 15069 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| | ||| || | ||| ||| ||||| || || || | | ||| Sbjct 15070 GCACATGGCAAAGCATCACATACAAACTCTCTCTCAATCTCAACTGCATCAGACACAATC 15129 Query 42014 GATCTTACTGTTTCTTCACT-CGGTGGATA-CAATAAATGTTTAAACATCAAACATGCGA 42071 |||||| |||||||||| | | | || || || | | | | |||||| || | Sbjct 15130 TCTCTTACCCTTTCTTCACTAAGTTTGTTATTAAGCAA--CTCATAGAGCAAACAAGCAA 15187 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || ||||||| || ||||||| || || || || || || |||||||| |||| Sbjct 15188 AGTCACAGTGCAAGCCTTCATCTCGGGAGATCAACTCATTTGAGAAGGTGAGTCCAGGCA 15247 Query 42132 TTA 42134 ||| Sbjct 15248 TTA 15250 >seq24040 Length=12015 Score = 86.0 bits (94), Expect = 8e-12 Identities = 236/359 (66%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 ||||| || || || | || || || |||||||||||||||| ||| ||| ||| Sbjct 4005 TGGTACTCCCCAACCCTCTTCTCAAAGAAATTAGTCTTTCCTTGCAAACTAATAAGCTCC 4064 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 || |||||||||| || ||| ||| | ||| | | ||||| | || | Sbjct 4065 ATCTAATCAAACGGGTTTTGCGCATCATACAATTTCCCATAGCCCAAAGCCGATGATAGC 4124 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956 ||||| | | ||||| ||||| | |||||| |||| ||||||||| | || | Sbjct 4125 CTATCAACCACAAATTCAATATACTTACTCATCAAATCACCATTCATTCCCACAACGGCA 4184 Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016 || | ||| || | |||||| |||||| || || | | ||||||| | Sbjct 4185 CACGGTAAAGCATCACATATAAATTCCCATTCAATCTCAACTGCATAAGATATAATATCT 4244 Query 42017 CTTACTGTTTCTTCACTC-GGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 || ||| | |||| |||| | | | || || ||| | | |||||| || ||||| Sbjct 4245 CTAACTCTCTCTTTACTCAGCTTGTTA-TTTAGCAATTTGTAGAGCAAACAAGCAAAATC 4303 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 ||||||| || ||||||| || || || || || || |||||||| ||||||| Sbjct 4304 ACAGTGCAAGCCTTCATCTCGGGAGATCAACTCATTTGAGAAGGTGAGTCCAGGCATTA 4362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670241551320000