Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq84028 96.9 4e-15 seq83573 86.0 6e-12 >seq84028 Length=6065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| ||||||||||| | |||| |||||||||||| Sbjct 3380 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGC 3321 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || |||| || | |||||| || ||||| ||||| |||||||| ||||| Sbjct 3320 TTCCCCGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTG 3261 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||||| | || | ||||| | | ||| || |||| || | ||||||||| || Sbjct 3260 GCTTTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTG 3201 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || || || ||||| Sbjct 3200 AGGGTTTTCACAAAGATCTGCAT 3178 >seq83573 Length=2953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||| ||| | |||| ||||||||||| || || Sbjct 2323 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTCGAGTTGCTTTCCT 2264 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | |||||| || ||||| ||||| |||||||| ||||| |||| Sbjct 2263 GCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTT 2204 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| || |||| || | |||||||| || | ||| Sbjct 2203 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTT 2144 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 2143 TTCACAAAGATCTGCAT 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506336268240000