Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq97783 105 6e-18 seq91609 105 6e-18 seq83573 105 6e-18 seq25263 105 6e-18 seq101539 89.7 4e-13 seq78223 87.8 1e-12 seq13002 82.4 6e-11 >seq97783 Length=4057 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || |||||||||||||| | || ||||||| Sbjct 390 CACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTC 449 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| ||||||||||| ||| ||| | ||||||||||| Sbjct 450 AAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 509 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| ||||||| ||| || | |||||| ||||| Sbjct 510 GATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTT 569 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || || || || || |||||| Sbjct 570 GCCAGTCAAGGTCTTTACGAATATCTGCATT 600 >seq91609 Length=4479 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || | |||||| | ||||| |||| ||| |||||||| || || ||||| || || Sbjct 244 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 185 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | || | ||||||||||||| || ||||| |||| || | |||||| ||| || Sbjct 184 AAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 125 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | |||||| ||||| || || || || | | ||| || || || ||| Sbjct 124 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCAC 65 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| || ||||| ||||||| ||||| ||||| || |||||||| Sbjct 64 CTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTT 14 >seq83573 Length=2953 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || |||||||||||||| | || ||||||| Sbjct 2564 CACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTC 2505 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| ||||||||||| ||| ||| | ||||||||||| Sbjct 2504 AAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 2445 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| ||||||| ||| || | |||||| ||||| Sbjct 2444 GATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTT 2385 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || || || || || |||||| Sbjct 2384 GCCAGTCAAGGTCTTTACGAATATCTGCATT 2354 >seq25263 Length=4349 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || |||||||||||||| | || ||||||| Sbjct 390 CACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTC 449 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| ||||||||||| ||| ||| | ||||||||||| Sbjct 450 AAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 509 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| ||||||| ||| || | |||||| ||||| Sbjct 510 GATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTT 569 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || || || || || |||||| Sbjct 570 GCCAGTCAAGGTCTTTACGAATATCTGCATT 600 >seq101539 Length=5526 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||| |||| | | |||| ||||| ||| |||||||| ||||| |||||||| || Sbjct 1989 TCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGC 2048 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || ||| | | ||||||| ||| ||||| ||| | || | |||||||||||| || Sbjct 2049 CAGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGGTGG 2108 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || || || || ||| || ||| || | | | || ||| ||| Sbjct 2109 GATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAAC 2168 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| || || || | || |||||||| ||||||||| Sbjct 2169 CTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 2217 >seq78223 Length=3817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||| |||| | | |||| ||||| ||| |||||||| ||||| |||||||| || Sbjct 1992 TCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGC 2051 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || ||| | | ||||||| ||| || || ||| | || | |||||||||||| || Sbjct 2052 CAGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGG 2111 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || || || || ||| || ||| || | | | || ||| ||| Sbjct 2112 GATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAAC 2171 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || || || ||||||||||| ||||| Sbjct 2172 CTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq13002 Length=8172 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || | |||||| | ||||| |||| ||| |||||||| || || ||||| || || Sbjct 5185 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 5126 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | || ||||||||||||| || ||||| |||| || | |||||| ||| || Sbjct 5125 GAGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 5066 Query 18934 CACGCCCTCTTTGTC 18948 | |||||| ||||| Sbjct 5065 GATGCCCTCCTTGTC 5051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414032171158000