Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq97783 93.3 3e-14 seq83573 93.3 3e-14 seq25263 93.3 3e-14 seq21431 93.3 3e-14 seq95352 86.0 4e-12 >seq97783 Length=4057 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||| ||| || || ||| || || ||||||||||| | | || || |||| || Sbjct 163 ACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGGC-CATCTTC 221 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| ||||| |||||||| |||| || ||||||||| | || | || || ||||| Sbjct 222 CAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTG 281 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || || ||| ||||| | |||||| || | || || || || Sbjct 282 AATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACTTCAAGGGTGATAGTCTT 341 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 342 CCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 >seq83573 Length=2953 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||| ||| || || ||| || || ||||||||||| | | || || |||| || Sbjct 2791 ACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGGC-CATCTTC 2733 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| ||||| |||||||| |||| || ||||||||| | || | || || ||||| Sbjct 2732 CAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTG 2673 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || || ||| ||||| | |||||| || | || || || || Sbjct 2672 AATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACTTCAAGGGTGATAGTCTT 2613 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 2612 CCCCGTCAAAGTCTTCACAAAAATCTGCAT 2583 >seq25263 Length=4349 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||| ||| || || ||| || || ||||||||||| | | || || |||| || Sbjct 163 ACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCAAGAGTGCGGC-CATCTTC 221 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| ||||| |||||||| |||| || ||||||||| | || | || || ||||| Sbjct 222 CAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTG 281 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || || ||| ||||| | |||||| || | || || || || Sbjct 282 AATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACTTCAAGGGTGATAGTCTT 341 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 342 CCCCGTCAAAGTCTTCACAAAAATCTGCAT 371 >seq21431 Length=3066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGTC 43971 ||||| || || || ||| || |||||||||||||| | || | || |||| || Sbjct 596 ACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATC-TGCAAGGGTTCGACCATCATC 538 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || || ||||| ||||||| ||||| ||| | || | || || ||||| Sbjct 537 CAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTG 478 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | ||| ||||| | |||||| || | ||||| ||||| Sbjct 477 TATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATGGTTTT 418 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||||||||| ||||| Sbjct 417 CCCAGTCAAGGTTTTCACAAATATCTGCAT 388 >seq95352 Length=5640 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| ||||||||||| ||||||| ||||| || | || | || || | Sbjct 190 CATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCT 131 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| |||||| || || | ||| ||||| | |||||| || | |||| Sbjct 130 TATCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAA 71 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || || || ||||||||||| ||||| Sbjct 70 TGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354314947836000