Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06]
107,000 sequences; 660,509,584 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq88716 91.5 1e-13
>seq88716
Length=16829
Score = 91.5 bits (100), Expect = 1e-13
Identities = 250/376 (66%), Gaps = 8/376 (2%)
Strand=Plus/Plus
Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906
||||||||| || || || || | || || ||||||||||| ||||| || || |
Sbjct 14877 CATAACAGAGGCCTTCTGGTACTCTCCCACCCTCTTTTCAAAAAAATTTGTCTTCCCCTG 14936
Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCC 12966
|| ||| ||||| |||| || ||||| | || | ||| ||||| | ||
Sbjct 14937 CAAACTAATCAACTCCATCCAATCAAACGGATTCTGCGCATCATACAATTTTCCGTATCC 14996
Query 12967 TAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTT 13026
||| | || | || ||||| ||||| || ||||||| |||| | ||||| ||
Sbjct 14997 CAATGCCCCCAATAGCCTATCAGCCACAAATTCAATGTACTTGCTCATCAGATCACCATT 15056
Query 13027 CATTCCTATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTG 13085
|||||| | || ||| |||| ||| || || ||| | | | || || |||||||
Sbjct 15057 CATTCCCA-CAAGAGCACATGGCAAAGCATCACATACAAACTCTCTCTCAATCTCAACTG 15115
Query 13086 CTTCGATAACTATGTCTCTTA---TTACGTTCTCTAATGGAGGATTTGATAGATGCTTAA 13142
| || || || ||||||| || | ||| |||| | | | | | || || |
Sbjct 15116 CATCAGACACAATCTCTCTTACCCTTTC-TTCACTAA-GTTTGTTATTA-AGCAACTCAT 15172
Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202
| | || ||| ||||| ||||||||||| |||||||||| || | ||| ||||| |
Sbjct 15173 AGAGCAAACAAGCAAAGTCACAGTGCAAGCCTTCATCTCGGGAGATCAACTCATTTGAGA 15232
Query 13203 ATGTTAGACCCGGCAT 13218
| || || || |||||
Sbjct 15233 AGGTGAGTCCAGGCAT 15248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430420372014000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |