Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq88716 91.5 1e-13 >seq88716 Length=16829 Score = 91.5 bits (100), Expect = 1e-13 Identities = 250/376 (66%), Gaps = 8/376 (2%) Strand=Plus/Plus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| || || || || | || || ||||||||||| ||||| || || | Sbjct 14877 CATAACAGAGGCCTTCTGGTACTCTCCCACCCTCTTTTCAAAAAAATTTGTCTTCCCCTG 14936 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCC 12966 || ||| ||||| |||| || ||||| | || | ||| ||||| | || Sbjct 14937 CAAACTAATCAACTCCATCCAATCAAACGGATTCTGCGCATCATACAATTTTCCGTATCC 14996 Query 12967 TAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTT 13026 ||| | || | || ||||| ||||| || ||||||| |||| | ||||| || Sbjct 14997 CAATGCCCCCAATAGCCTATCAGCCACAAATTCAATGTACTTGCTCATCAGATCACCATT 15056 Query 13027 CATTCCTATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTG 13085 |||||| | || ||| |||| ||| || || ||| | | | || || ||||||| Sbjct 15057 CATTCCCA-CAAGAGCACATGGCAAAGCATCACATACAAACTCTCTCTCAATCTCAACTG 15115 Query 13086 CTTCGATAACTATGTCTCTTA---TTACGTTCTCTAATGGAGGATTTGATAGATGCTTAA 13142 | || || || ||||||| || | ||| |||| | | | | | || || | Sbjct 15116 CATCAGACACAATCTCTCTTACCCTTTC-TTCACTAA-GTTTGTTATTA-AGCAACTCAT 15172 Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 | | || ||| ||||| ||||||||||| |||||||||| || | ||| ||||| | Sbjct 15173 AGAGCAAACAAGCAAAGTCACAGTGCAAGCCTTCATCTCGGGAGATCAACTCATTTGAGA 15232 Query 13203 ATGTTAGACCCGGCAT 13218 | || || || ||||| Sbjct 15233 AGGTGAGTCCAGGCAT 15248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430420372014000