Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq13002 96.9 3e-15 seq91609 93.3 4e-14 seq25263 87.8 2e-12 seq78223 82.4 6e-11 >seq13002 Length=8172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| | ||| | ||| || || |||||| || |||||||| || || Sbjct 5184 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5125 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||||||||||||| || || |||| | |||||||| ||| ||| Sbjct 5124 AGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 5065 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || ||||| || | |||||| Sbjct 5064 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGACGACTCCA 5007 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 ||| | || || || || || || || |||||||| || ||||||||| || || Sbjct 5006 CCTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCATCCTGACT 4951 >seq91609 Length=4479 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| | ||| | ||| || || |||||| || |||||||| || || Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC- 185 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || |||||||||||||||| || || |||| | |||||||| ||| ||| Sbjct 184 AAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 125 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||| | | | || || || | ||| ||| Sbjct 124 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCAC 65 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || || || ||||| ||||| |||||||| Sbjct 64 CTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCAT 17 >seq25263 Length=4349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || || |||||| || |||||||| || || || || || | |||| Sbjct 846 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGACCATCCT 904 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| | | || | | |||||| ||| || | || ||| |||||| Sbjct 905 CGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCCT 964 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||||| | | || || || | | ||| ||| | || ||||| | Sbjct 965 GGATTTTAGCCTTGACATTGTCGATCGTGTCAGAACTTTCCACCTCAAGGGTGATGGTCT 1024 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||||| || ||||||||||||||||||||| Sbjct 1025 TACCGGTAAGCGTTTTCACAAAAATCTGCATC 1056 >seq78223 Length=3817 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556 || ||||| |||| | | || || || || || |||||| ||||||||||||||| Sbjct 1990 AATCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCA 2049 Query 48557 GCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 |||| ||| | ||||||| |||||| ||| | | || || | |||||||||| Sbjct 2050 GCCAGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGT 2109 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTC 48675 || | | |||||| || ||| || ||| || | | | ||||| |||| ||| Sbjct 2110 GGGATCCCTTCCTTATCTTGAATCTT-TGCTTTCACATTATCAATGGTGTCGGAGCTCTC 2168 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || || || | || || ||||||||||||||| Sbjct 2169 AACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCATC 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420701862107000