Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq81399 113 2e-20 seq49397 113 2e-20 seq42793 113 2e-20 seq24618 113 2e-20 seq84594 105 3e-18 seq81720 105 3e-18 seq57060 105 3e-18 seq39585 105 3e-18 seq105606 104 1e-17 seq48122 102 4e-17 seq46299 102 4e-17 seq100798 100 1e-16 seq85221 100 1e-16 seq83456 100 1e-16 seq64029 100 1e-16 seq56200 100 1e-16 seq13653 100 1e-16 seq9371 100 1e-16 seq64173 98.7 5e-16 seq98144 95.1 6e-15 seq87961 89.7 3e-13 seq83461 89.7 3e-13 seq52053 89.7 3e-13 seq28042 89.7 3e-13 seq91722 87.8 9e-13 seq64354 87.8 9e-13 >seq81399 Length=3450 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1072 AAAAATCA--TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1129 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1130 CTCTAACCAACTGAGCTAATAGGCC 1154 >seq49397 Length=16658 Score = 113 bits (124), Expect = 2e-20 Identities = 84/97 (87%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 11438 ATTAATAAAAAAT---CAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || || ||||||| || || ||||||||| | | |||||||| |||||||||||||| Sbjct 4166 ATAAACAAAAAATAGGCAGATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 4225 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||||||||||| Sbjct 4226 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 4262 >seq42793 Length=1714 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 831 AAAAATCA--TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 888 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 889 CTCTAACCAACTGAGCTAATAGGCC 913 >seq24618 Length=9141 Score = 113 bits (124), Expect = 2e-20 Identities = 84/97 (87%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 11438 ATTAATAAAAAAT---CAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || || ||||||| || || ||||||||| | | |||||||| |||||||||||||| Sbjct 4976 ATAAACAAAAAATAGGCAGATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 4917 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||||||||||| Sbjct 4916 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 4880 >seq84594 Length=7385 Score = 105 bits (116), Expect = 3e-18 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||| | | ||||| || ||||||||| | | |||||||| |||||||||||||| Sbjct 672 TAAAATGATTGAAAAAACA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 728 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 729 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 764 >seq81720 Length=4247 Score = 105 bits (116), Expect = 3e-18 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||| | | ||||| || ||||||||| | | |||||||| |||||||||||||| Sbjct 3576 TAAAATGATTGAAAAAACA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 3520 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 3519 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3484 >seq57060 Length=4216 Score = 105 bits (116), Expect = 3e-18 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||| | | ||||| || ||||||||| | | |||||||| |||||||||||||| Sbjct 672 TAAAATGATTGAAAAAACA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 728 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 729 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 764 >seq39585 Length=6618 Score = 105 bits (116), Expect = 3e-18 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||| | | ||||| || ||||||||| | | |||||||| |||||||||||||| Sbjct 2994 TAAAATGATTGAAAAAACA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 3050 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 3051 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3086 >seq105606 Length=3990 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2883 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2942 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2943 TGAGCTAATAGGCC 2956 >seq48122 Length=6421 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2888 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 2829 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2828 CTGAGCTAATAGGCC 2814 >seq46299 Length=3803 Score = 102 bits (112), Expect = 4e-17 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 11438 ATTAATAAAAAAT---CAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || || ||||||| || || ||||||||| | | |||||||| |||||||||||||| Sbjct 2909 ATAAACAAAAAATAGGCAGATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 2850 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| |||||||||| |||| Sbjct 2849 TTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 2814 >seq100798 Length=6241 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 5837 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5778 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5777 TGAGCTAATAGGCC 5764 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 6232 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 6174 >seq85221 Length=4582 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1004 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1063 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1064 TGAGCTAATAGGCC 1077 >seq83456 Length=8539 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 4149 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4208 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4209 TGAGCTAATAGGCC 4222 >seq64029 Length=9427 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2458 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2517 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2518 TGAGCTAATAGGCC 2531 >seq56200 Length=6645 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3759 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3818 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3819 TGAGCTAATAGGCC 3832 >seq13653 Length=3888 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3022 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2963 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2962 TGAGCTAATAGGCC 2949 >seq9371 Length=3813 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3409 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3350 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3349 TGAGCTAATAGGCC 3336 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 3804 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3746 >seq64173 Length=7565 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||| Sbjct 389 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTAACCAG 330 Query 11515 CTGAGCTAATGGGCCGTC 11532 |||||||||| |||| || Sbjct 329 CTGAGCTAATAGGCCTTC 312 >seq98144 Length=3812 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 3803 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3745 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||| | ||||| Sbjct 3408 TGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGACGCTTTAGCCAAC 3349 Query 11516 TGAGCTAAT 11524 |||| |||| Sbjct 3348 TGAGATAAT 3340 >seq87961 Length=11538 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | | |||||| | ||||||||||||||||||| ||||||| || Sbjct 4395 AAAATGGCCCATGCAGGTCTTGAACCTACAACCTTCGCGTTATTAGCACAACGCTCTAAC 4336 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 4335 CAGCTGAGCTAATAGGCC 4318 >seq83461 Length=10874 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | | |||||| | ||||||||||||||||||| ||||||| || Sbjct 3398 AAAATGGCCCATGCAGGTCTTGAACCTACAACCTTCGCGTTATTAGCACAACGCTCTAAC 3457 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 3458 CAGCTGAGCTAATAGGCC 3475 >seq52053 Length=10704 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | | |||||| | ||||||||||||||||||| ||||||| || Sbjct 6310 AAAATGGCCCATGCAGGTCTTGAACCTACAACCTTCGCGTTATTAGCACAACGCTCTAAC 6369 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 6370 CAGCTGAGCTAATAGGCC 6387 >seq28042 Length=8076 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | | |||||| | ||||||||||||||||||| ||||||| || Sbjct 4395 AAAATGGCCCATGCAGGTCTTGAACCTACAACCTTCGCGTTATTAGCACAACGCTCTAAC 4336 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 4335 CAGCTGAGCTAATAGGCC 4318 >seq91722 Length=7061 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 6/84 (7%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||| ||||||||||||||||||||||||| Sbjct 4007 AAAATGAA--TGGCCCATGCAGGTCTCGAAC----GACCTTCGCGTTATTAGCACGACGC 3954 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 3953 TCTAACCAGCTGAGCTAATAGGCC 3930 >seq64354 Length=12331 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 6/84 (7%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||| ||||||||||||||||||||||||| Sbjct 2454 AAAATGAA--TGGCCCATGCAGGTCTCGAAC----GACCTTCGCGTTATTAGCACGACGC 2507 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 2508 TCTAACCAGCTGAGCTAATAGGCC 2531 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261150199132000