Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8277 122 1e-23 seq34387 118 2e-22 seq106378 113 7e-21 seq16212 113 7e-21 seq1727 86.0 1e-12 seq93413 82.4 1e-11 >seq8277 Length=4915 Score = 122 bits (134), Expect = 1e-23 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||| ||||| || || || || |||||||| | ||| Sbjct 4344 CTTCGGGACAACATCCAGGGCATCACGAAGCCTGCAATTCGCCGGTTGGCTCGTAGGGGT 4285 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| || ||| || | || || |||| |||| || |||||||||||| Sbjct 4284 GGGGTCAAGCGTATCAGTGGGCTGATATACGAGGAGACGCGTGGGGTGTTGAAGATCTTC 4225 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || ||||| || ||||| |||||||| | ||||||||| Sbjct 4224 CTAGAGAATGTGATTAGGGATGCAGTCACATATACTGAGCACGCCCGCAGGAAGACTGTC 4165 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || ||||| | || ||| | | | ||||| || || Sbjct 4164 ACGGCTATGGATGTGGTGTACGCGTTGAAGAGACAGGGCAGGACCCTGTATGGGTTCGGT 4105 Query 16694 AGTTAAT 16700 ||| || Sbjct 4104 GGTTGAT 4098 >seq34387 Length=2476 Score = 118 bits (130), Expect = 2e-22 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| |||||| | | ||||||||| | || Sbjct 392 CTTCGTGACAACATCCAGGGTATCACCAAGCCGGCTATCAGGAGGCTGGCTCGTAGGGGC 333 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || || | | || || |||| |||| ||| | |||||||| Sbjct 332 GGTGTCAAGCGTATATCGGGGCTCATTTACGAGGAGACACGTGGCGTTCTCAAGATCTTT 273 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| |||||| | ||||| ||||| || | | ||||| || Sbjct 272 CTTGAGAATGTCATCCGTGATGCAGTGACGTATACAGAGCATGCGAGGAGGAAGACGGTG 213 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| |||| | || || | | | ||||| ||||| Sbjct 212 ACGGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGGGAGGACTTTGTATGGGTTTGGG 153 Query 16694 AGTTA 16698 |||| Sbjct 152 GGTTA 148 >seq106378 Length=1395 Score = 113 bits (124), Expect = 7e-21 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| |||||| | | ||||||||| | || Sbjct 392 CTACGTGACAACATCCAGGGTATCACCAAGCCGGCTATCAGGAGGCTGGCTCGTAGGGGC 333 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || || | | || || |||| |||| ||| | |||||||| Sbjct 332 GGTGTCAAGCGTATATCGGGGCTCATTTACGAGGAGACACGTGGCGTTCTCAAGATCTTT 273 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| |||||| | ||||| ||||| || | | ||||| || Sbjct 272 CTTGAGAATGTCATCCGTGATGCAGTGACGTATACAGAGCATGCGAGGAGGAAGACGGTG 213 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| |||| | || || | | | ||||| ||||| Sbjct 212 ACGGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGGGAGGACTTTGTATGGGTTTGGG 153 Query 16694 AGTTA 16698 |||| Sbjct 152 GGTTA 148 >seq16212 Length=3243 Score = 113 bits (124), Expect = 7e-21 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| |||||| | | ||||||||| | || Sbjct 2175 CTACGTGACAACATCCAGGGTATCACCAAGCCGGCTATCAGGAGGCTGGCTCGTAGGGGC 2234 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || || | | || || |||| |||| ||| | |||||||| Sbjct 2235 GGTGTCAAGCGGATATCGGGGCTCATTTACGAGGAGACACGTGGCGTTCTCAAGATCTTT 2294 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| |||||| | ||||||||||| || | | ||||| || Sbjct 2295 CTTGAGAATGTCATCCGTGATGCAGTGACGTATACCGAGCATGCGAGGAGGAAGACGGTG 2354 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| |||| | || || | | | ||||| ||||| Sbjct 2355 ACGGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGGGAGGACTTTGTATGGGTTTGGG 2414 Query 16694 AGTTA 16698 |||| Sbjct 2415 GGTTA 2419 >seq1727 Length=5912 Score = 86.0 bits (94), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523 ||||||| || ||||||||||| || ||| | | ||||| ||| | || |||||||||| Sbjct 3213 ACATCCAGGGCATCACCAAGCCTGCGATCAGATGGCTGGCGCGTAGGGGCGGAGTCAAGC 3154 Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583 | ||| || | | ||||| |||| |||| || | ||||| || || || | Sbjct 3153 GCATCTTGGGGCTCATTTATGAGGAGACACGTGGCGTGCTCAAGATATTACTTCGGAATG 3094 Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 ||||| ||||| || | || |||||||| || | | ||||| || || | |||| Sbjct 3093 TTATCTGTGATG-TTAC--GTACACCGAGCATGCCCAGAGGAAGACGGTGACAGCGATGG 3037 Query 16644 ATATCGTCTATGCATTGAAACGTCAAGG 16671 || | || |||||| | ||| | || || Sbjct 3036 ATGTGGTGTATGCACTCAAAAGGCAGGG 3009 >seq93413 Length=1587 Score = 82.4 bits (90), Expect = 1e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 190 CTTCGTGACAACATCCAGGGTATCACCAAGCCTGCGATCCGACGGCTGGCGAGGAGAGGC 131 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | | || || | || ||||||| |||| || |||||||| ||| Sbjct 130 GGAGTGAAGAGGATAAGCGGTCTGATATACGAAGAGACACGTGGCGTGTTGAAGATATTC 71 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || |||||| | ||||| |||||||||| | ||||| || Sbjct 70 TTGGAGAATGTGATTAGGGATGCTGTGACTTATACAGAGCACGCTAGGAGGAAGACGGTT 11 Query 16634 ACCTCCATGG 16643 || | |||| Sbjct 10 ACTGCTATGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78977369151000