Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq64505 102 8e-17 seq83573 98.7 9e-16 seq101539 86.0 6e-12 seq91609 86.0 6e-12 seq84028 86.0 6e-12 seq97783 84.2 2e-11 >seq64505 Length=10574 Score = 102 bits (112), Expect = 8e-17 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| |||||||||||||| || || |||||||| || | |||| | |||||||| Sbjct 3936 TTACCAGGACAAAGAAGGGATCCCACCTGATCAACAGAGGTTGATTTTTGCGGGCAAACA 3877 Query 26915 ACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 ||| ||||||| ||| | | ||||| |||||||| || || || ||| | ||||| Sbjct 3876 ACTTGAAGATGGCCGAACCCTTGCGGACTACAACATTCAGAAGGAGTCGACTCTTCATCT 3817 Query 26975 GGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| || |||||||||| Sbjct 3816 TGTTCTGAGGCTCAGAGGAGGAA 3794 >seq83573 Length=2953 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | |||||| | || | ||| | Sbjct 2127 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2186 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| || || |||||||| || || ||||| || || Sbjct 2187 GACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCAG 2246 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || || || ||||||||||||| | | | | |||||| ||| Sbjct 2247 CAAAGGCTCATCTTCGCAGGAAAGCAACTCGAAGATGGCCGCACCCTTGCCGACTACAAC 2306 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || || ||||| |||| ||||| || || | || || |||| Sbjct 2307 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATTAAGGGGTGGAA 2355 >seq101539 Length=5526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | |||||| | || | || | Sbjct 3318 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTCC 3259 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 3258 GACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 3199 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | | || ||||| ||||| |||| | | | | |||||| ||| Sbjct 3198 CAAAGGCTCATCTTTGCTGGAAAACAGCTCGAGGATGGCCGTACCCTTGCCGACTACAAC 3139 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || ||||| | || ||||| || | ||||| ||||| Sbjct 3138 ATCCAGAAGGAGTCTACCCTTCACCTGGTGCTTCGCCTTAGGGGAGG 3092 >seq91609 Length=4479 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||| |||||||| | ||||||||||| |||| |||||| |||||||| | || | || Sbjct 10 AAAAAAAATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGA 69 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 ||| ||||| ||||| | || || ||||| ||||| || || || || || Sbjct 70 ATCTTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCC 129 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 || || || | || |||| || || || || || || || | | | | | ||| Sbjct 130 GGACCAGCAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGA 189 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||| ||||| || || || || || | |||||||| ||||| | || || ||| Sbjct 190 CTACAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGGA 244 >seq84028 Length=6065 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || |||||||| | || | ||| | Sbjct 3178 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTCC 3237 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| || || |||||||| || || ||||| || || Sbjct 3238 GACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCAG 3297 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || || || ||||||||||| | | | | || || || ||| Sbjct 3298 CAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAAC 3357 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || | || || ||||| Sbjct 3358 ATCCAAAAGGAGTCGACCCTTCACCTTGTCCT 3389 >seq97783 Length=4057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | |||||| | || | || | Sbjct 1055 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTCC 996 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 995 GACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 936 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | | ||| || || ||||| || | | | | | |||||| ||| Sbjct 935 CAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 876 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || ||||| ||||| |||| |||| || |||| ||||| |||| Sbjct 875 ATCCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGACTCAGAGGTGGAA 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478022189040000