Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq97783 91.5 1e-13 seq91609 91.5 1e-13 seq84028 91.5 1e-13 seq83573 87.8 2e-12 seq64505 82.4 7e-11 >seq97783 Length=4057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || |||||| | | Sbjct 1055 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGAGCTCC 996 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 995 GACACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 936 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| ||||| ||||| || | | | | | | ||| || ||| Sbjct 935 CAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 876 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || ||||| ||||| | || || ||| | || | ||||| ||| Sbjct 875 ATCCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGACTCAGAGGTGGA 828 >seq91609 Length=4479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| |||||||| | ||||||||||| |||| |||||| |||| ||| | || || || Sbjct 10 AAAAAAAATGCAGATCTTTGTAAAAACCCTAACAGGAAAAACGATCACCCTTGAGGTGGA 69 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||||| ||||| | || || ||||| ||||| || ||||| || || Sbjct 70 ATCTTCGGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCC 129 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || || ||| | ||||||| || || ||||| || || || | | | | | | ||| Sbjct 130 GGACCAGCAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGCACCCTTGCCGA 189 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || || || | ||| | ||| | || ||||| || ||| Sbjct 190 CTACAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGGA 244 >seq84028 Length=6065 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || |||| ||| | || || || | | Sbjct 3178 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTGGAAAGCTCC 3237 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| || || |||||||| ||||| ||||| || || Sbjct 3238 GACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCAG 3297 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || || |||||||||||||| | | | | | || ||||| ||| Sbjct 3298 CAAAGGCTCATCTTCGCGGGGAAGCAACTCGAAGACGGCCGCACCCTCGCTGATTACAAC 3357 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || || || |||| Sbjct 3358 ATCCAAAAGGAGTCGACCCTTCA 3380 >seq83573 Length=2953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || || || | | Sbjct 2127 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2186 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| || || |||||||| ||||| ||||| || || Sbjct 2187 GACACCATCGACAACGTAAAAGCCAAAATCCAAGACAAAGAGGGCATTCCTCCGGACCAG 2246 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || || |||||||||||||||| | | | | | ||| || ||| Sbjct 2247 CAAAGGCTCATCTTCGCAGGAAAGCAACTCGAAGATGGCCGCACCCTTGCCGACTACAAC 2306 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || ||||| | || | ||| | |||| || || ||| Sbjct 2307 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATTAAGGGGTGGA 2354 >seq64505 Length=10574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/142 (73%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| ||||||||||| || || || ||||||||||| |||||| | ||||| || Sbjct 3936 TTACCAGGACAAAGAAGGGATCCCACCTGATCAACAGAGGTTGATTTTTGCGGGCAAACA 3877 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 ||| ||||||| | ||| | | || || |||||||| || || || || ||||| | Sbjct 3876 ACTTGAAGATGGCCGAACCCTTGCGGACTACAACATTCAGAAGGAGTCGACTCTTCATCT 3817 Query 24197 AGTGTTAAGATTGAGAGGAGGA 24218 || | || | ||||||||| Sbjct 3816 TGTTCTGAGGCTCAGAGGAGGA 3795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429375336585000