Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq91609 136 3e-27 seq13002 118 9e-22 seq78223 111 1e-19 seq64505 93.3 3e-14 seq97783 91.5 1e-13 seq83573 91.5 1e-13 seq25263 91.5 1e-13 seq84028 89.7 4e-13 seq100029 86.0 5e-12 >seq91609 Length=4479 Score = 136 bits (150), Expect = 3e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 |||||| |||| ||||||||| |||||||| || |||||||||||||| | ||| | | Sbjct 232 CCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCC 173 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||||| || || ||||| |||| || ||||| |||||| || | |||||| || Sbjct 172 GTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 113 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || |||||| | | | | ||||| | ||| || | |||| Sbjct 112 GTCCTGGATCTTGGC--CTTCACATTGTCGATCGTGTCCGAAGATTCCACCTCAAGGGTG 55 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || |||||||| || || ||||| ||||| ||||||||||| Sbjct 54 ATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTT 14 >seq13002 Length=8172 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 |||||| |||| ||||||||| |||||||| || |||||||||||||| | || | Sbjct 5173 CCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGTCC 5114 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||||| || || ||||| |||| || ||||| |||||| || | |||||| || Sbjct 5113 GTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 5054 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || ||| || | | | | ||||| | |||| |||| |||| Sbjct 5053 GTCCTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCCAGGGTG 4996 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||| ||||| || || |||||||| Sbjct 4995 ATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq78223 Length=3817 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| |||||||| |||||||| || |||||||| || ||| Sbjct 1993 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2052 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | |||||||| || || || ||| | || | || ||| || ||| || Sbjct 2053 AGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 2112 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| ||||| ||||| | | | |||||| | ||| Sbjct 2113 ATCCCTTCCTTATCTTGAATCTTTGCT--TTCACATTATCAATGGTGTCGGAGCTCTCAA 2170 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||| |||| ||| ||||||||||||||||| Sbjct 2171 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq64505 Length=10574 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| |||||||| || | ||| || || |||||||| || ||||||||||| || Sbjct 3796 CCTCCTCTGAGCCTCAGAACAAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCCGCA 3855 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | ||||||||||||| |||| | || |||||| || || Sbjct 3856 AGGGTTCGGCCATCTTCAAGTTGTTTGCCCGCAAAAATCAACCTCTGTTGATCAGGTGGG 3915 Query 16829 ACGCCCTCTTTGTC 16842 | || |||||||| Sbjct 3916 ATCCCTTCTTTGTC 3929 >seq97783 Length=4057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||| || || |||||||| ||||| || || || || Sbjct 145 CCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCA 204 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || ||| |||| |||| ||| |||||| || Sbjct 205 AGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGG 264 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||||| |||||| | | | || || | |||| | Sbjct 265 ATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACT 324 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || || || |||| || || ||||||||||||||| Sbjct 325 TCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCATT 372 >seq83573 Length=2953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||| || || |||||||| ||||| || || || || Sbjct 2809 CCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCA 2750 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || ||| |||| |||| ||| |||||| || Sbjct 2749 AGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGG 2690 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||||| |||||| | | | || || | |||| | Sbjct 2689 ATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACT 2630 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || || || |||| || || ||||||||||||||| Sbjct 2629 TCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCATT 2582 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | | || Sbjct 2338 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCT 2279 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || || | || |||| || |||||| ||| | |||||||||||| Sbjct 2278 TCGAGTTGCTTTCCTGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCT 2219 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | |||||| | ||| || | |||||| | Sbjct 2218 TGGATTTTGGCT--TTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTG 2161 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| ||||| |||||||| Sbjct 2160 TCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2127 >seq25263 Length=4349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||| || || |||||||| ||||| || || || || Sbjct 145 CCACCACGTAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGTATATTATAATCTGCA 204 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || ||| |||| |||| ||| |||||| || Sbjct 205 AGAGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAAATCAGCCTCTGCTGGTCCGGTGGG 264 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||||| |||||| | | | || || | |||| | Sbjct 265 ATCCCCTCCTTATCCTGAATTTTGACCTTCACATTATCAATGGTATCCGAGCTCTCCACT 324 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || || || |||| || || ||||||||||||||| Sbjct 325 TCAAGGGTGATAGTCTTCCCCGTCAAAGTCTTCACAAAAATCTGCATT 372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | ||| Sbjct 844 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCC 903 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| | || |||| ||| |||||| || | || |||||||| Sbjct 904 TCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCC 963 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | ||||| ||| || | ||||||||| Sbjct 964 TGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAACTTTCCACCTCAAGGGTGATGGTC 1023 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||| |||||||||||||| Sbjct 1024 TTACCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 >seq84028 Length=6065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| |||||||| || || | ||| | |||| || | ||| Sbjct 3380 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGC 3321 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || ||||| | || |||| || |||||| ||| | |||||||||||| || || Sbjct 3320 TTCCCCGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTG 3261 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| | ||| || | |||||| || || || | Sbjct 3260 GCT--TTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAG 3203 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| ||||| |||||||| Sbjct 3202 TGAGGGTTTTCACAAAGATCTGCAT 3178 >seq100029 Length=1069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || | ||| | || |||| || || || |||||||| || |||||||||||||| Sbjct 615 CCCGCCACATAGGCGTAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 556 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||| | || || || ||| |||| |||| ||| ||||| || Sbjct 555 AAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGGGG 496 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || ||| || | | | | ||||| | ||| Sbjct 495 GATGCCCTCCTTATCCTGGATCTTAGC--CTTAACGTTGTCAATGGTGTCAGAGCTCTCA 438 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 437 ACCTCTAGGGTTATGGTCTTTCCTGTGAGCGTCTTGACGAAGATCTGCAT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404559739930000