Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq104964 131 1e-25 seq89527 131 1e-25 seq97783 109 4e-19 seq95352 109 4e-19 seq83573 109 4e-19 seq25263 109 4e-19 seq21431 107 1e-18 seq99948 96.9 2e-15 seq44579 96.9 2e-15 seq101539 95.1 8e-15 seq100029 91.5 1e-13 seq13002 89.7 3e-13 seq41970 86.0 4e-12 seq6667 86.0 4e-12 >seq104964 Length=6910 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1276 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1335 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1336 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1370 >seq89527 Length=9871 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1276 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1335 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1336 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1370 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 3270 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 3329 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 3330 GCCCATATTTAGCCTT 3345 >seq97783 Length=4057 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| ||||| || |||||| || ||||||||||| | | || |||| || Sbjct 390 CACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTC 449 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || |||||||| || || | || || || | ||| | || ||||||||| Sbjct 450 AAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 509 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||||| | || |||||| || ||||| || | ||||| ||||| Sbjct 510 GATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTT 569 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || |||||||||||||| Sbjct 570 GCCAGTCAAGGTCTTTACGAATATCTGCAT 599 >seq95352 Length=5640 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| ||||||||| || |||||||||| |||| | | || || ||||| Sbjct 236 TGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTCCCATCCTCCAATTGC 177 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || | | || ||||| | |||| || || || ||| |||||| Sbjct 176 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTATCCTGTATTTTT 117 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | ||||| || || || || | ||||| ||||| || ||| Sbjct 116 GCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATGGTTTTCCCAGTC 57 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 ||||||||||| ||||||||||| Sbjct 56 AAGGTTTTCACAAATATCTGCAT 34 >seq83573 Length=2953 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| ||||| || |||||| || ||||||||||| | | || |||| || Sbjct 2564 CACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTC 2505 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || |||||||| || || | || || || | ||| | || ||||||||| Sbjct 2504 AAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 2445 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||||| | || |||||| || ||||| || | ||||| ||||| Sbjct 2444 GATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTT 2385 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || |||||||||||||| Sbjct 2384 GCCAGTCAAGGTCTTTACGAATATCTGCAT 2355 >seq25263 Length=4349 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| ||||| || |||||| || ||||||||||| | | || |||| || Sbjct 390 CACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCCTC 449 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || |||||||| || || | || || || | ||| | || ||||||||| Sbjct 450 AAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTG 509 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||||| | || |||||| || ||||| || | ||||| ||||| Sbjct 510 GATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTTTT 569 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || |||||||||||||| Sbjct 570 GCCAGTCAAGGTCTTTACGAATATCTGCAT 599 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| | || | |||||| || || || |||||| || || ||||| | Sbjct 825 CATT-CCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGT 883 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || | || || | || ||||||||||| || || | || || || | Sbjct 884 CGGCAAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCG 943 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||||||||| ||||| ||| ||||| | || || || ||||| Sbjct 944 GTGGGATACCTTCTTTGTCCTGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAACTTT 1003 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || || ||||| || | |||||||| || |||||||| Sbjct 1004 CCACCTCAAGGGTGATGGTCTTACCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 >seq21431 Length=3066 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG----TC 38164 ||||| |||||||| |||||| |||||||| ||||| | ||| ||||| || Sbjct 596 ACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATCTG-CAAGG---GTTCGACCATC 541 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || ||||| || |||||||| || | | || ||||| | |||| || || || || Sbjct 540 ATCCAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTATC 481 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | |||||| ||||||||| | | ||||| || || || || | ||||| || Sbjct 480 CTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATGGT 421 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || |||||||||||||| ||||||||||| Sbjct 420 TTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 388 >seq99948 Length=7592 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 3704 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 3645 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 3644 GCCCATATTTAGCCTT 3629 >seq44579 Length=9620 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 6113 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 6172 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 6173 GCCCATATTTAGCCTT 6188 >seq101539 Length=5526 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||||||| | |||||||||||| || |||||| || || ||||| || | Sbjct 2632 TACCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTG 2691 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || || ||||| || || | || || || | || Sbjct 2692 CAAGAGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGG 2751 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||| || ||| || || | | || ||| || || | Sbjct 2752 GGATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCA 2811 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || || || | ||| |||||||| ||||||||| Sbjct 2812 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATG 2861 >seq100029 Length=1069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||||||| | |||||||||||| || |||||| || || ||||| || | Sbjct 388 TACCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTG 329 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || || || || || || | || || || | || Sbjct 328 CAAGAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCTGGGG 269 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||| || ||| || || | | || ||| || || | Sbjct 268 GGATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCA 209 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || || || | ||| |||||||| ||||||||| Sbjct 208 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATG 159 >seq13002 Length=8172 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| ||||| | || ||||| ||| || || |||||| || || ||||| || | Sbjct 5184 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5125 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || ||||| || || || ||||| || || || | ||| Sbjct 5124 AGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 5065 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCAAC 38269 | ||| || |||||| || || ||| || || | || || || | || || || Sbjct 5064 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-CGACGACTCCAC 5006 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||||| ||||||||||||||||||||| Sbjct 5005 CTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq41970 Length=13344 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/90 (81%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG-----GGGTAATCTCGT 25956 |||||| |||||| |||| |||||| ||||||||||||| | | || |||||| | Sbjct 2939 AAGCCCATTCCCTCGGCTTTGGTTTTGCTAGATAGTAGACAAGAACAATGGGAATCTCAT 2880 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||||| ||||| |||||||||||||||| Sbjct 2879 TAATCCATTCATAAGCGTCACTAATTAGAT 2850 >seq6667 Length=12399 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | || | |||||| || || || || |||||| | ||||| | || Sbjct 10891 CCACCTCAAAGGCGGAGCACCAAGTGGAGGGTTGATTCTTTTTGAGTGTTGTAGTGAGCA 10950 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || || | || || | ||| ||||| ||||| || || ||||| || || | ||| Sbjct 10951 AGGACCCGATGATCCTCGAGTTGCTTTCCTGCAAAAATGAGCCGTTGCTGGTCCGGTGGG 11010 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 ||||| || |||||| |||||| || || || | |||||| | ||||| || Sbjct 11011 ACGCCCTCCTTGTCCCAGATTTTTGCTTTAACGTTGTCGACAGTGTTGGAGCTTTCGACC 11070 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || | || ||||| | ||||||| ||||||||||| Sbjct 11071 TCAAGGGTGATGGACTTGCCCGTGAGAGTTTTCATAAATATCTGCAT 11117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334510407917000