Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq88716 87.8 2e-12 seq24040 87.8 2e-12 seq12357 87.8 2e-12 seq10414 87.8 2e-12 >seq88716 Length=16829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 32785 |||| || | ||| || ||||| || || | | || | | ||| ||| || |||||||| Sbjct 15574 ATTATACCTCTCTTCTTCAGCCAGAAGATAG-CACAGAAGCTCCCAGAGAAAAAAATTCC 15632 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 32845 ||| || |||||| ||||||| ||||| || | | | ||| |||||| | Sbjct 15633 TTCCACACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCACCATTGATCCACCT 15692 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| | |||||||| | ||||| || || ||||| || |||| ||| | Sbjct 15693 CAACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACAACCT 15752 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | |||||| || || | ||||| |||| || | |||||||| || || || Sbjct 15753 ATGCTTTTCAGCTGAGTCCTTTATATATGACTCAAGCAGCAAGCTATACATCTCAGAGTG 15812 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGT 33020 ||||| |||||||| || || || || ||||| ||| | ||||| | || |||| Sbjct 15813 TATGTTCTCAATGGCAATCTGGAAGCCATAGAATGCA-CGGGCCTCAGCAACCTGT 15867 >seq24040 Length=12015 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 32785 |||| || | ||| || ||||| || || | | || | | ||| ||| || |||||||| Sbjct 4686 ATTATACCTCTCTTCTTCAGCCAGAAGATAG-CACAGAAGCTCCCAGAGAAAAAAATTCC 4744 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 32845 ||| || |||||| ||||||| ||||| || | | | ||| |||||| | Sbjct 4745 TTCCACACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCACCATTGATCCACCT 4804 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| | |||||||| | ||||| || || ||||| || |||| ||| | Sbjct 4805 CAACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAACAACCT 4864 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | |||||| || || | ||||| |||| || | |||||||| || || || Sbjct 4865 ATGCTTTTCAGCTGAGTCCTTTATATATGACTCAAGCAGCAAGCTATACATCTCAGAGTG 4924 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGT 33020 ||||| |||||||| || || || || ||||| ||| | ||||| | || |||| Sbjct 4925 TATGTTCTCAATGGCAATCTGGAAGCCATAGAATGCA-CGGGCCTCAGCAACCTGT 4979 >seq12357 Length=26847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | || |||| ||| |||| | || ||| ||||| |||||| Sbjct 18130 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 18071 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || || ||||| || || |||||||| ||| | || || ||||| ||| || Sbjct 18070 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 18011 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || || || | ||| ||| || || ||||||||||| Sbjct 18010 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 17951 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || || || || ||||| ||||| | ||||| ||||| Sbjct 17950 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 17910 >seq10414 Length=13365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | || |||| ||| |||| | || ||| ||||| |||||| Sbjct 4648 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACACGCAGCATGGGAATTATACCA 4589 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || || ||||| || || |||||||| ||| | || || ||||| ||| || Sbjct 4588 TTAGACGTCCCATTTGTTCCACGAATATAGCTGCCAGTAGCCCGGATATTGTGAATGGAG 4529 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || || || | ||| ||| || || ||||||||||| Sbjct 4528 ACACCAATTCCTCCAGCAGACTTGCTAATGACTGCACATTCCTTCAAAGTATCATAGATT 4469 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || || || || ||||| ||||| | ||||| ||||| Sbjct 4468 CCTTCAATGCTGTCATCTTTCATGCACACCAGAAAGCAGCT 4428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632784517200000