Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq25263 123 2e-23 seq97783 114 1e-20 seq83573 114 1e-20 seq64505 114 1e-20 seq13002 91.5 1e-13 seq6667 84.2 2e-11 >seq25263 Length=4349 Score = 123 bits (136), Expect = 2e-23 Identities = 171/236 (72%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || | |||||||| ||||||| | || ||||| Sbjct 1060 AACAGATGCAGATTTTTGTGAAAACGCTTACCGGTAAGACCATCACCCTTGAGGTGGAAA 1001 Query 25054 CGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||||| ||||| || || ||| |||||| ||||||||||| || ||||| Sbjct 1000 GTTCTGACACGATCGA--CAATGTCAAGGCTAAAATCCAGGACAAAGAAGGTATCCCACC 943 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| ||| || | || |||||||| || || | || |||| |||||| | | ||| Sbjct 942 GGACCAGCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTGCCGA 883 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || || || || || ||||| | || ||||| |||| Sbjct 882 CTACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTTCGACTCAGAGGTGGAA 827 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || | ||||| | ||||||||| || Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 312 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACCA 253 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || ||||| || ||||||| |||||| | | ||||| || Sbjct 252 GCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATAA 193 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || ||| | || || Sbjct 192 TATACAGAAGGAGTCGACCCTTCATCTGGTTCT 160 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| |||||||| ||||| || ||| | || || | || || ||| || Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 540 CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 481 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||||||||| || | || || | |||||| | | |||||||| Sbjct 480 GCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAA 421 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || ||||| Sbjct 420 TATCCAGAAGGAGTCAACCCTTCACTTGGTGCT 388 >seq97783 Length=4057 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || | ||||| | ||||||||| || Sbjct 372 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 313 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 312 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACCA 253 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || ||||| || ||||||| |||||| | | ||||| || Sbjct 252 GCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATAA 193 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || ||| | || || Sbjct 192 TATACAGAAGGAGTCGACCCTTCATCTGGTTCT 160 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| |||||||| ||||| || ||| | || || | || || ||| || Sbjct 600 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 541 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 540 CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 481 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||||||||| || | || || | |||||| | | |||||||| Sbjct 480 GCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAA 421 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || ||||| Sbjct 420 TATCCAGAAGGAGTCAACCCTTCACTTGGTGCT 388 >seq83573 Length=2953 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| |||||||| ||||| || ||| | || || | || || ||| || Sbjct 2354 AATGCAGATATTCGTAAAGACCTTGACTGGCAAAACGATTACCCTTGAGGTTGAGAGCTC 2413 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| ||||| || ||| |||||||| || ||||| || ||||| Sbjct 2414 CGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 2473 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||||||||| || | || || | |||||| | | |||||||| Sbjct 2474 GCAGAGACTCATTTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTGCGGATTACAA 2533 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || ||||| Sbjct 2534 TATCCAGAAGGAGTCAACCCTTCACTTGGTGCT 2566 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || | ||||| | ||||||||| || Sbjct 2582 AATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACTATCACCCTTGAAGTGGAGAGCTC 2641 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 2642 GGATACCATTGATAATGTGAAGGTCAAAATTCAGGATAAGGAGGGGATCCCACCGGACCA 2701 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || ||||| || ||||||| |||||| | | ||||| || Sbjct 2702 GCAGAGGCTGATTTTTGCAGGGAAACAGTTGGAAGATGGCCGCACTCTTGCAGATTATAA 2761 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || ||| | || || Sbjct 2762 TATACAGAAGGAGTCGACCCTTCATCTGGTTCT 2794 >seq64505 Length=10574 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 |||||||||||||| |||||||| |||||| || | |||||||| ||||||||| | ||| Sbjct 3929 GACAAAGAAGGGATCCCACCTGATCAACAGAGGTTGATTTTTGCGGGCAAACAACTTGAA 3870 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || || | | || ||||| ||||| || || || || || ||| | || || Sbjct 3869 GATGGCCGAACCCTTGCGGACTACAACATTCAGAAGGAGTCGACTCTTCATCTTGTTCTG 3810 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| |||||||||| Sbjct 3809 AGGCTCAGAGGAGGAA 3794 >seq13002 Length=8172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || |||| || || | ||||| | || ||||||||||| Sbjct 4958 ATGCAGATATTCGTGAAAACCCTGACGGGGAAGACGATCACCCTGGAGGTGGAGTCGTCG 5017 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 5018 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5077 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || | || || | || || | | ||| ||||| Sbjct 5078 CAGCGCCTGATTTTCGCGGGAAAGCAGCTGGAGGACGGACGGACGCTCGCCGACTACAAC 5137 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || || || || ||||| ||| | ||||| ||| | || || ||| Sbjct 5138 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGAGGTTGAGGGGTGGA 5185 >seq6667 Length=12399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||| | || ||| | || || || |||||||| | || || || || Sbjct 11117 ATGCAGATATTTATGAAAACTCTCACGGGCAAGTCCATCACCCTTGAGGTCGAAAGCTCC 11058 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||| | | ||||||||| || ||||| || || | ||||| ||||| Sbjct 11057 AACACTGTCGACAACGTTAAAGCAAAAA-TCTGGGACAAGGAGGGCGTCCCACCGGACCA 10999 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | |||||||| || || ||| | || ||| |||| | | | ||||| Sbjct 10998 GCAACGGCTCATTTTTGCAGGAAAGCAACTCGAGGATCATCGGGTCCTTGCTCACTACAA 10939 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||||||| || || || || ||||| Sbjct 10938 CACTCAAAAAGAATCAACCCTCCACTTGGTGCT 10906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432762913205000