Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq18114 91.5 2e-13 seq6551 91.5 2e-13 seq89203 86.0 7e-12 seq62297 86.0 7e-12 seq29484 86.0 7e-12 seq62071 84.2 2e-11 >seq18114 Length=5408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/93 (83%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||||||| | |||||| || || | || Sbjct 2344 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAGGTTCTGGTCCTCGAACGAGGGC 2403 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||| || ||||| ||||| ||||||| Sbjct 2404 GTGGGTTCAAATCCCACTTCTGAC--ATTATTA 2434 >seq6551 Length=14873 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||||||| | |||||| ||||| || Sbjct 11127 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAGGTTCTGGT--CCTCGTGAGAGG 11184 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 11185 GCGTGGGTTCAAATCCCACTTCTGACA 11211 >seq89203 Length=14226 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 6421 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6364 Query 126328 TTCGAACCCCACACCTGAC-AAATTATTATT 126357 ||| || |||||| ||| | ||||| ||||| Sbjct 6363 TTCAAATCCCACAGCTGTCAAAATTTTTATT 6333 >seq62297 Length=16136 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 13123 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 13180 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 13181 GCGTGGGTTCAAATCCCACTTCTGACA 13207 >seq29484 Length=11643 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 8630 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 8687 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 8688 GCGTGGGTTCAAATCCCACTTCTGACA 8714 >seq62071 Length=3833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 ||||||| ||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2468 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2525 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 |||||| || |||||| ||| || Sbjct 2526 GGGTTCAAATCCCACAGCTGTCA 2548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556115998680000