Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq97783 89.7 4e-13 seq25263 89.7 4e-13 seq21431 84.2 2e-11 >seq97783 Length=4057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | ||||| || |||||||| | || ||| | | Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | | ||| || ||| ||||| |||||| ||||| | || Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||||||||| || || ||||| || ||| | ||| |||| || ||||| Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| |||||||| || Sbjct 648 CATCCAGAAGGAGTCTACTCTCCA 625 >seq25263 Length=4349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | ||||| || |||||||| | || ||| | | Sbjct 828 AATGCAAATCTTCGTGAAAACCCTCACGGGAAAGACCATTACACTTGAGGTTGAAAGCTC 769 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | | ||| || ||| ||||| |||||| ||||| | || Sbjct 768 CGACACCATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGTATACCTCCGGATCA 709 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||||||||| || || ||||| || ||| | ||| |||| || ||||| Sbjct 708 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGACGCACTCTGGCGGACTACAA 649 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| ||||| || || |||| | || ||| | || ||| Sbjct 648 CATCCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGATTAAGGGGTGGA 600 >seq21431 Length=3066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| || || || ||||||||||| | || ||| | | Sbjct 388 ATGCAGATATTTGTGAAAACCTTGACTGGGAAAACCATTACTCTTGAGGTGGAGAGCTCT 447 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||| ||||| | || | || Sbjct 448 GATACAATTGACAATGTGAAGGCAAAAATACAGGATAAGGAGGGGATCCCACCGGATCAG 507 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| || || ||| | || ||| ||| | || ||||| ||| Sbjct 508 CAGAGGTTGATCTTTGCCGGGAAGCAATTGGATGATGGTCGAACCCTTGCAGATTATAAT 567 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| ||||||||||| |||| Sbjct 568 ATTCAGAAGGAGTCTACTCTTCACTTGGT 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357657782878000