Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq21431 116 3e-21 seq84028 113 4e-20 seq83573 113 4e-20 seq78223 95.1 1e-14 seq101539 89.7 4e-13 seq6667 87.8 2e-12 seq91609 86.0 5e-12 >seq21431 Length=3066 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||||||||| | | || | ||| | |||||| || || || || ||||| ||| Sbjct 389 ATACCGCCACGTAGACGAAGGACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCG 330 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || ||||||||| ||||||| | ||| ||||| || Sbjct 329 GCAAGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGG 270 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | |||| |||||| | | || Sbjct 269 GGGATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCC 210 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | || || ||||| || || || || || ||||||||| || Sbjct 209 ACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCT 156 >seq84028 Length=6065 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||||||||| | || || ||||| ||||| || || Sbjct 3374 GTCGACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCC 3315 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | || ||||||||||||||||| |||||||| || || |||| Sbjct 3314 GCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTT 3255 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | ||| || || | ||| | ||| ||||| || || ||| Sbjct 3254 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTT 3195 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 3194 TTCACAAAGATCTGCAT 3178 >seq83573 Length=2953 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||| | || || |||||| ||||| || || Sbjct 2323 GTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTCGAGTTGCTTTCCT 2264 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | || ||||||||||||||||| |||||||| || || |||| Sbjct 2263 GCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTT 2204 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | ||| || || | ||| | || ||||| || || ||| Sbjct 2203 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTT 2144 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2143 TTCACAAAGATCTGCAT 2127 >seq78223 Length=3817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| || || | ||| || || || |||||||||||||| | Sbjct 1993 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2052 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||| || | || || || || |||| | | ||| || ||||| || Sbjct 2053 AGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 2112 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||||| ||| | | |||| |||||||| | || || Sbjct 2113 ATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAACC 2172 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || || || |||| || || |||||||||||||| Sbjct 2173 TCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq101539 Length=5526 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| || || | ||| || || || |||||||||||||| | Sbjct 1990 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2049 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||| || | || ||||| || |||| | | ||| || ||||| || Sbjct 2050 AGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGGTGGG 2109 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||||| ||| | | |||| |||||||| | || || Sbjct 2110 ATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAACC 2169 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || || || || || || || ||||| || ||||| Sbjct 2170 TCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 2216 >seq6667 Length=12399 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTA--CGAGAATCTTCAAGTTGTTTAC 114243 || |||||||||||| ||||||| | | || || | ||| ||| || ||||| || | Sbjct 10921 GTTGATTCTTTTTGAGTGTTGTAGT-GAGCA-AGGACCCGATGATCCTCGAGTTGCTTTC 10978 Query 114244 CAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTT 114303 | || | ||||| || || |||||||| || | ||| || ||||| || ||||| | Sbjct 10979 CTGCAAAAATGAGCCGTTGCTGGTCCGGTGGGACGCCCTCCTTGTC-CCAGATTTTTGCT 11037 Query 114304 TTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGA 114362 ||| | | || || |||| || | |||||| || | ||| | | ||||| || ||| Sbjct 11038 TTAACGTTGTCGACAGTGTTGGAGCTTTCGACCTCAAGGGTGATGGACTTGCCCGTGAGA 11097 Query 114363 GTTTTTACAAAAATCTGCAT 114382 ||||| | ||| |||||||| Sbjct 11098 GTTTTCATAAATATCTGCAT 11117 >seq91609 Length=4479 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227 |||| || | ||| | ||| || || || || |||||||| ||| | || || Sbjct 231 CTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCG 172 Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| | || || ||||| |||||||| || ||||| || ||| Sbjct 171 TCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 112 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | ||||| | ||||| || || | ||| | | Sbjct 111 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACCTCAAGGGTGATC 52 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || ||||||||||| |||||||| Sbjct 51 GTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586518484000