Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq43607 93.3 4e-14 seq43534 93.3 4e-14 >seq43607 Length=12364 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||||||||||| ||| | || || ||||| || ||||| ||||| || || Sbjct 5690 ACCACAAACATGAGCAATCATGCATGTCAAAAGGGAGTAAGATGCAATATTAAATGGCAC 5631 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| ||||||||| | || | |||||||| ||||| || |||||||| | ||||| Sbjct 5630 TCCCAGACCCATGTCAGCAGATCGCTGATACATTTGACATGACAGCTCACCATTGGCTAC 5571 Query 20359 ATAAAATTG 20367 ||||| || Sbjct 5570 GTAAAACTG 5562 >seq43534 Length=7047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||||||||||| ||| | || || ||||| || ||||| ||||| || || Sbjct 5067 ACCACAAACATGAGCAATCATGCATGTCAAAAGGGAGTAAGATGCAATATTAAATGGCAC 5008 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| ||||||||| | || | |||||||| ||||| || |||||||| | ||||| Sbjct 5007 TCCCAGACCCATGTCAGCAGATCGCTGATACATTTGACATGACAGCTCACCATTGGCTAC 4948 Query 20359 ATAAAATTG 20367 ||||| || Sbjct 4947 GTAAAACTG 4939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440782463880000