Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq91609 116 3e-21 seq13002 95.1 1e-14 seq101539 91.5 1e-13 seq78223 91.5 1e-13 seq21431 82.4 6e-11 >seq91609 Length=4479 Score = 116 bits (128), Expect = 3e-21 Identities = 170/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || |||||||||||| ||||| ||||||||| |||||||| || || Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC- 185 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||| || || || |||||||||||||| ||| ||| Sbjct 184 AAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 125 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| || | || | | || | |||||| Sbjct 124 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG---TCGATCGTGTCCGAAGATTC 68 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | || || |||||||| ||||| ||||| |||||||| ||||||||| Sbjct 67 CACCTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTTT 13 >seq13002 Length=8172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || |||||||||||| ||||| ||||||||| |||||||| || || Sbjct 5184 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5125 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||| || || || |||||||||||||| ||| ||| Sbjct 5124 AGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 5065 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 5064 ATGCCCTCCTTGTCC 5050 >seq101539 Length=5526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| ||||| | ||| || || |||| || ||||| ||||||||||||||||||||| Sbjct 1986 GAATCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATC 2045 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| ||| | || ||||| ||||| || ||||| |||| | |||||||||| Sbjct 2046 AGCCAGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGG 2105 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | | || || | | | | | ||||||| ||||| ||||| | | || Sbjct 2106 TGGGATCCCTTCCTTAT-CTTGAATCTTTGCTT--------TCACATTATCAATGGTGTC 2156 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || ||||| || || || || |||||||||||||| Sbjct 2157 GGAGCTCTCAACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 2216 Query 34128 T 34128 | Sbjct 2217 T 2217 >seq78223 Length=3817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| ||||| | ||| || || |||| || ||||| ||||||||||||||||||||| Sbjct 1989 GAATCCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATC 2048 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| ||| | || ||||| ||||| |||||||| |||| | |||||||||| Sbjct 2049 AGCCAGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCC 2106 >seq21431 Length=3066 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || |||| ||||| || |||||||||||| || ||||| Sbjct 618 GAAACCACCACGAAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTATAATC 559 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| | ||| | || ||||||||||| |||||||| |||| | |||||||||| Sbjct 558 TGCAAGGGTTCGACCATCATCCAATTGCTTCCCGGCAAAGATCAACCTCTGCTGATCC 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396544605814000