Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13002 141 2e-28 seq84028 114 3e-20 seq83573 107 5e-18 seq97783 105 2e-17 seq95352 105 2e-17 seq25263 105 2e-17 seq42099 104 6e-17 seq101539 100 7e-16 seq21431 98.7 2e-15 seq100029 96.9 8e-15 seq64157 95.1 3e-14 seq37991 95.1 3e-14 seq22278 95.1 3e-14 >seq13002 Length=8172 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | || || || ||||| | ||| || || ||||| || |||||||| Sbjct 5185 TCCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 5126 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||| |||||||| || | || ||||| ||||| ||||| ||||| || || Sbjct 5125 GAGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGG 5066 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| || || || ||||| || || | || ||| || || Sbjct 5065 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCAC 5006 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| ||||| || || |||||||||||||| Sbjct 5005 CTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq84028 Length=6065 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || || |||||||| || || || ||| Sbjct 3404 CCACCACGGAGACGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCG 3345 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || ||||| |||||||| | ||| || || |||||||| || | |||| | | | Sbjct 3344 AGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAAGATGAGCCTTTGCTGGTCCGGA--- 3288 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||| || |||||||| ||||| ||||| || || | ||| ||| Sbjct 3287 GGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTTTCC 3228 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| || || || || || || || |||||||| Sbjct 3227 ACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 3178 >seq83573 Length=2953 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||||| || ||||| || ||||| | ||| |||||||||||| Sbjct 2317 TCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTCGAGTTGCTTTCCTGCGAAG 2258 Query 288343 ATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | |||| | | | || || || ||||| || |||||||| ||||| ||| Sbjct 2257 ATGAGCCTTTGCTGGTCCGGA---GGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTACG 2201 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || || ||||| ||||| || || || || || Sbjct 2200 TTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTC 2141 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 2140 ACAAAGATCTGCAT 2127 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || | |||| || || || |||||||| || || || Sbjct 2582 TCCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGC 2523 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || || || || || || || | ||| || || || Sbjct 2522 AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGG---TCCGG 2466 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 | || || ||||| |||||||| ||||| ||||| || || |||| |||| ||| Sbjct 2465 GGGAATACCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTC-- 2408 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| || || |||| ||||| ||||||||||||||| Sbjct 2407 -TCAACCTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCATT 2354 >seq97783 Length=4057 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || | |||| || || || |||||||| || || || Sbjct 372 TCCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGC 431 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || || || || || || || | ||| || || || Sbjct 432 AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGG---TCCGG 488 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 | || || ||||| |||||||| ||||| ||||| || || |||| |||| ||| Sbjct 489 GGGAATACCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTC-- 546 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| || || |||| ||||| ||||||||||||||| Sbjct 547 -TCAACCTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCATT 600 Score = 95.1 bits (104), Expect = 3e-14 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||||| ||| || | || | || ||||| ||||| || |||||||| Sbjct 828 TCCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGC 887 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || || || || ||||| || | ||| || ||||| Sbjct 888 AAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGG---TCTGG 944 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | |||||||| || || ||||| || || || || || || || | || |||| Sbjct 945 GGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAGCTC-- 1002 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || || || || || || |||||||| Sbjct 1003 -TCGACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1055 >seq95352 Length=5640 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | || || |||||||| || || || || Sbjct 260 CCACCACGGAGACGAAGGACAAGGTGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGCC 201 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || || || ||||| |||||||| ||||||| | ||| ||| |||| Sbjct 200 AAAGTCCTCCCATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGG 141 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || |||||||| ||||| || ||||| || || || | ||| |||| || Sbjct 140 ATCCCCTCCTTATCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTC---TCC 84 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| |||| || || || ||||||||||| Sbjct 83 ACCTCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 34 >seq25263 Length=4349 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || | |||| || || || |||||||| || || || Sbjct 372 TCCACCACGAAGTCGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGC 431 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || || || || || || || | ||| || || || Sbjct 432 AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGG---TCCGG 488 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 | || || ||||| |||||||| ||||| ||||| || || |||| |||| ||| Sbjct 489 GGGAATACCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTC-- 546 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| || || |||| ||||| ||||||||||||||| Sbjct 547 -TCAACCTCAAGGGTAATCGTTTTGCCAGTCAAGGTCTTTACGAATATCTGCATT 600 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||||| ||| || | || | || || || ||||| || |||||||| Sbjct 828 TCCACCTCTGAGTCGAAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 887 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | || ||||| || ||||| || | ||| || ||| Sbjct 888 AAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 947 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| ||||||||||| || || || || || || | || ||| || Sbjct 948 GATACCTTCTTTGTCCTGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAACTTTCCAC 1007 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || || || |||||||| Sbjct 1008 CTCAAGGGTGATGGTCTTACCGGTAAGCGTTTTCACAAAAATCTGCAT 1055 >seq42099 Length=15505 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || ||||| || || || || || || || | ||||||||||| Sbjct 15226 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGCTCGATTCG 15285 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || |||||||||||||| || || || ||||| |||||||| Sbjct 15286 ACTTCGAGGGTAATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 15335 >seq101539 Length=5526 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||||| || ||||| || || || | || ||||| || ||| Sbjct 2442 TCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAG 2501 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || ||||||||||| || || || ||| Sbjct 2502 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTAACG 2558 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || || || || ||||| || || || ||| Sbjct 2559 TTGTCAATGGTGTCAGAGCTC---TCAACCTCTAGGGTTATGGTCTTTCCTGTGAGCGTC 2615 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 2616 TTGACGAAGATCTGCAT 2632 >seq21431 Length=3066 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || |||||||| || || || || || || || || ||||| || || || ||| Sbjct 578 TCCTTCTGAATATTATAATCTGCAAGGGTTCGACCATCATCCAATTGCTTCCCGGCAAAG 519 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| |||||| || || |||||||| ||||| || ||||| || Sbjct 518 ATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTGTATTTTTGCCTTCACATTG 459 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| |||| || || || || || || || ||||| |||| || || Sbjct 458 TCAATTGTATCAGAGCTC---TCCACCTCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTC 402 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 401 ACAAATATCTGCAT 388 >seq100029 Length=1069 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||||| || ||||| || || || | || ||||| || || Sbjct 578 TCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAA 519 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || ||||||||||| || || || ||| Sbjct 518 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTAACG 462 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || || || || ||||| || || || ||| Sbjct 461 TTGTCAATGGTGTCAGAGCTC---TCAACCTCTAGGGTTATGGTCTTTCCTGTGAGCGTC 405 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 404 TTGACGAAGATCTGCAT 388 >seq64157 Length=15399 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | ||||||||||| || Sbjct 15255 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGCTCGATTCGACC 15314 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || || || |||||||||||||| Sbjct 15315 TCAAGGGTGATCGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 15361 >seq37991 Length=15385 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | ||||||||||| || Sbjct 15241 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGCTCGATTCGACC 15300 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || || || |||||||||||||| Sbjct 15301 TCAAGGGTGATCGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 15347 >seq22278 Length=14491 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | ||||||||||| || Sbjct 145 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGCTCGATTCGACC 86 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || || || |||||||||||||| Sbjct 85 TCAAGGGTGATCGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178037167546000