Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq88716 89.7 6e-13 seq24040 89.7 6e-13 >seq88716 Length=16829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 125/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| | |||||||| |||||| || ||||| || || ||||| || ||||| ||||| Sbjct 15579 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 15638 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCAAACCACTTCA 126233 |||||| ||||||| | | ||||||||| || | | || | || | |||| ||| Sbjct 15639 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCACCAT-TG---ATCCACCTCA 15694 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||||||| ||||| ||||| | ||| |||| |||| || || | ||| Sbjct 15695 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAA 15746 >seq24040 Length=12015 Score = 89.7 bits (98), Expect = 6e-13 Identities = 125/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| | |||||||| |||||| || ||||| || || ||||| || ||||| ||||| Sbjct 4691 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 4750 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCAAACCACTTCA 126233 |||||| ||||||| | | ||||||||| || | | || | || | |||| ||| Sbjct 4751 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCACCAT-TG---ATCCACCTCA 4806 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||||||| ||||| ||||| | ||| |||| |||| || || | ||| Sbjct 4807 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAA 4858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554639560000