Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq91609 127 2e-24 seq13002 111 2e-19 seq21431 107 2e-18 seq84028 102 9e-17 seq101539 96.9 4e-15 seq78223 82.4 8e-11 >seq91609 Length=4479 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || || | || ||||| ||||| || |||||| || || ||||| || || Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 184 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 183 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 124 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || || | | | | |||||| |||||||| Sbjct 123 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACC 64 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| ||||| || ||||| || ||||||||||| |||||||| Sbjct 63 TCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTT 14 >seq13002 Length=8172 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || || | || ||||| ||||| || |||||| || || ||||| || || Sbjct 5184 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5125 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || ||||| |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 5124 AGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 5065 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || |||| ||| | | | ||||| ||| ||||| Sbjct 5064 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCCAC 5006 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || ||||| || || || || || || ||||| Sbjct 5005 CTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq21431 Length=3066 Score = 107 bits (118), Expect = 2e-18 Identities = 146/197 (74%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || || || ||| | || || ||||||||||||||||| Sbjct 351 CTCCTTCTGGATATTGTAGTCGGCAAGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAA 292 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | | ||||||||| ||| | || | |||| || Sbjct 291 GATGAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCC-TGAATCTTAGCCTTGA-CG 234 Query 42136 TCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | ||||| |||| ||||| |||| |||||||| || || || || ||| Sbjct 233 TTGTCAATGGTGTCTGAGCTC---TCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTC 177 Query 42192 TTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 176 TTCACGAAGATCTGCAT 160 >seq84028 Length=6065 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||||||||| || || || |||| || || ||||| || ||||| Sbjct 3369 CTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAA 3310 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | |||||||| | || | || ||| ||||| |||||| ||| | ||| Sbjct 3309 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTA-CGT 3251 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| |||||| || | ||||| || ||||| || || || || | Sbjct 3250 TGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCA 3191 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 3190 CAAAGATCTGCAT 3178 >seq101539 Length=5526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| |||| || |||||| ||||| |||||||||||| Sbjct 1990 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2049 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || | ||||||||| || || || | | |||||| || | ||| Sbjct 2050 AGAGTTCGGCCATCCTCCAACTGCTTACCTGCAAAGATCAACCTCTGCTGATCCGGTGGG 2109 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||| | | ||| | |||| ||| | | | | ||||| |||| || Sbjct 2110 ATCCCTTCCTTAT-CTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTC---TC 2165 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | |||||||| || || || || ||||| ||||||||||||||| Sbjct 2166 AACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 2217 >seq78223 Length=3817 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| |||| || |||||| ||||| |||||||||||| Sbjct 1993 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2052 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || | |||||| || || || || | | |||||| || | ||| Sbjct 2053 AGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 2112 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||| | | ||| | |||| ||| | | | | ||||| |||| || Sbjct 2113 ATCCCTTCCTTAT-CTTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTC---TC 2168 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || | |||||| ||||| || ||||| Sbjct 2169 AACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542486252880000