Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq97783 123 2e-23 seq83573 123 2e-23 seq25263 123 2e-23 seq84028 116 4e-21 seq91609 104 2e-17 seq13002 102 8e-17 seq101539 100 3e-16 seq95352 100 3e-16 seq21431 100 3e-16 seq100029 96.9 3e-15 seq78223 91.5 1e-13 seq64505 86.0 6e-12 >seq97783 Length=4057 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || || |||||||| || | |||||| |||| Sbjct 388 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCC 447 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| ||||||| | ||||||||| || ||||| || ||||| || Sbjct 448 TCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCC 507 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | || || || | || | || Sbjct 508 TGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTT 567 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| || |||||||| || |||||| Sbjct 568 TTGCCAGTCAAGGTCTTTACGAATATCTGCATT 600 >seq83573 Length=2953 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || || |||||||| || | |||||| |||| Sbjct 2566 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCC 2507 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| ||||||| | ||||||||| || ||||| || ||||| || Sbjct 2506 TCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCC 2447 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | || || || | || | || Sbjct 2446 TGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTT 2387 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| || |||||||| || |||||| Sbjct 2386 TTGCCAGTCAAGGTCTTTACGAATATCTGCATT 2354 >seq25263 Length=4349 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || || |||||||| || | |||||| |||| Sbjct 388 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGACCGTCC 447 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| ||||||| | ||||||||| || ||||| || ||||| || Sbjct 448 TCAAGCTGCTTGCCGGCAAAAATGAGTCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCC 507 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | || || || | || | || Sbjct 508 TGGATCTTCGCCTTCACATTGTCGATAGTATCGGAGCTCTCAACCTCAAGGGTAATCGTT 567 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| || |||||||| || |||||| Sbjct 568 TTGCCAGTCAAGGTCTTTACGAATATCTGCATT 600 >seq84028 Length=6065 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| || ||||| ||||||||||| |||| |||||| ||||| Sbjct 3389 AGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCT 3330 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || || | ||||||| |||||||| |||||||| || ||||| ||| Sbjct 3329 TCGAGTTGCTTCCCCGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCT 3270 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||| || | || || | ||||| || | || | ||| Sbjct 3269 TGGATTTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTC 3210 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||| || || || ||||| Sbjct 3209 TTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 3178 >seq91609 Length=4479 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || ||||| ||||| | |||||| || || || |||||||| || || Sbjct 243 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 184 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||| || || |||| || ||||||||||| || || Sbjct 183 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 124 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 123 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACC 64 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | || || || || | |||||||| || || |||||||| Sbjct 63 TCAAGGGTGATCGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCATTTT 14 >seq13002 Length=8172 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || ||||| ||||| | |||||| || || || |||||||| || ||| Sbjct 5184 CCACCCCTCAACCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5125 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||| || || |||| || ||||||||||| || || Sbjct 5124 AGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 5065 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCA 64394 || || || || || || || || ||| || || | || | ||| || |||| Sbjct 5064 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGT--CCGACGACTCCA 5007 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || |||| ||||| ||||| || ||||| Sbjct 5006 CCTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCAT 4958 >seq101539 Length=5526 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | ||||| | ||||| || || || || || |||||||| ||||| Sbjct 2633 ACCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGC 2692 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || |||||||||||||| ||| | ||||||| ||||||||| || || Sbjct 2693 AAGAGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 2752 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || || | || || | ||||| Sbjct 2753 GATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCAC 2812 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 2813 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 2860 >seq95352 Length=5640 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| || ||||| ||||||||||| || | || | | | || Sbjct 246 AAGGACAAGGTGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTCCCATC 187 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | ||||| || ||| | || | || |||||| || || || || || || || || Sbjct 186 CTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGGATCCCCTCCTTATC 127 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||||||||| ||| ||| || | ||||||| | ||||| || | ||| | ||| Sbjct 126 CTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATGGT 67 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| ||||| || || || ||||| Sbjct 66 TTTCCCAGTCAAGGTTTTCACAAATATCTGCAT 34 >seq21431 Length=3066 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| || ||||| | ||| || || || || || ||||| || || Sbjct 387 ACCGCCACGTAGACGAAGGACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGC 328 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| ||| | |||||||||||||| || || | ||||||| ||||||||| || || Sbjct 327 AAGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGG 268 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || || | || || | ||||| Sbjct 267 GATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCAC 208 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 207 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 160 >seq100029 Length=1069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | ||||| | ||||| || || || || || |||||||| ||||| Sbjct 387 ACCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGC 328 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || |||||||||||||| || | ||||||| ||||||||| || || Sbjct 327 AAGAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGG 268 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || || | || || | ||||| Sbjct 267 GATACCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCAC 208 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 207 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 160 >seq78223 Length=3817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| || || |||||||||||||| || | || || | || || | |||||| || Sbjct 2022 CGTCGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCCAACTGCTTTCC 2081 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 |||| | || | || |||||| || || || || ||||| || ||||| | | ||||||| Sbjct 2082 GGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCTTG-AATCTTTGCTT 2140 Query 64366 T-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 | ||| || | || || | || || || | || | |||||| || ||||| | Sbjct 2141 TCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTTCCAGTCAACG 2200 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || || ||||| ||||| Sbjct 2201 TCTTGACAAAAATCTGCAT 2219 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| |||||||| || ||||| | ||||| | || || |||||||||||| Sbjct 2251 GTAGACTCTTTCTGAATGTTATAGTCTGCAAGAGTGCGACCATCCTCGAGCTGCTTGCCG 2310 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || || | |||||||| || || || ||||| || ||||| || || Sbjct 2311 GCAAAGATAAGTCTTTGCTGGTCTGGGGGGATGCCTTCCTTATCTTGGATCTT 2363 >seq64505 Length=10574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||||| ||||| || || ||||||||||| || || | ||| || | Sbjct 3808 CTCAGAACAAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTTCGGCCA 3867 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 |||||||| || ||||| ||| |||| | || ||| || || || || || |||||||| Sbjct 3868 TCTTCAAGTTGTTTGCCCGCAAAAATCAACCTCTGTTGATCAGGTGGGATCCCTTCTTTG 3927 Query 64349 TCTTG 64353 || || Sbjct 3928 TCCTG 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498976525080000