Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25263 105 7e-18 seq84028 102 8e-17 seq83573 98.7 1e-15 seq101539 95.1 1e-14 seq97783 93.3 4e-14 seq91609 93.3 4e-14 seq13002 93.3 4e-14 seq100029 91.5 1e-13 seq78223 89.7 5e-13 seq21431 82.4 8e-11 >seq25263 Length=4349 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || |||| | Sbjct 862 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCA 921 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| |||||||| || |||||||||||||| |||||| || | | Sbjct 922 AAGATGAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCCTGGATTTTAGCCTTGACA 981 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | |||||||| | || | || ||||| || || ||||| Sbjct 982 TTG-TCGATCGTGTCAGAACTTTCCACCTCAAGGGTGATGGTCTTACCGGTAAGCGTTTT 1040 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 1041 CACAAAAATCTGCAT 1055 >seq84028 Length=6065 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || || ||| |||||||| || || | Sbjct 3371 GACTCCTTTTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCG 3312 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||||||||| || || |||||||| |||||| ||||| Sbjct 3311 AAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTACG 3252 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| |||||||| | || | ||| || ||||| || ||||| Sbjct 3251 TTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTC 3192 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 3191 ACAAAGATCTGCAT 3178 >seq83573 Length=2953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || || |||||||| || || | Sbjct 2320 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTCGAGTTGCTTTCCTGCG 2261 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||||||||| || || |||||||| |||||| ||||| Sbjct 2260 AAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATTTTGGCTTTTACG 2201 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| |||||||| | || | || || ||||| || ||||| Sbjct 2200 TTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTC 2141 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2140 ACAAAGATCTGCAT 2127 >seq101539 Length=5526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || ||||| | | | |||||||| || ||||||||||| Sbjct 2634 CCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2693 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || || | | |||| || | ||| ||||| || || Sbjct 2694 AGAGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 2753 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || | ||| || | |||||| | ||||| Sbjct 2754 ATACCTTCCTTGTC-CTGAATCTTAGCCTTGACGTTG-TCAATGGTGTCTGAGCTCTCCA 2811 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| || | || || || || || || || || || ||||||||| || Sbjct 2812 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCT 2864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| |||||||| ||||| || | | Sbjct 3125 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCATCCTCGAGCTGTTTTCCAGCA 3184 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | || ||||| || || || ||||| ||||| ||| || || | | Sbjct 3185 AAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACA 3244 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||| ||||| | || | || || ||||| || ||||| Sbjct 3245 TTG-TCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTT 3303 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 3304 CACAAAGATCTGCAT 3318 >seq97783 Length=4057 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | || || ||||||||| || || |||| | Sbjct 862 GACTCTTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCA 921 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | | Sbjct 922 AAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACA 981 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||| ||||| | || | || || ||||| || ||||| Sbjct 982 TTG-TCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTT 1040 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1041 CACAAAGATCTGCAT 1055 >seq91609 Length=4479 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || || | Sbjct 210 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTTCCCGCG 151 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 150 AAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 91 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | || |||||||| | || | |||||| || || || ||||| Sbjct 90 TTG-TCGATCGTGTCCGAAGATTCCACCTCAAGGGTGATCGTTTTTCCTGTTAGGGTTTT 32 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 31 TACAAAGATCTGCAT 17 >seq13002 Length=8172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || || | Sbjct 5151 GACTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGTCCGTCCTCCAGCTGCTTTCCCGCG 5092 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 5091 AAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 5032 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||||||||| | || | ||| || || ||||| ||||| Sbjct 5031 TTGTCGATGGTGTCCGACGACTCCACCTCCAGGGTGATCGTCTTCCCCGTCAGGGTTTTC 4972 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4971 ACGAATATCTGCAT 4958 >seq100029 Length=1069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || ||||| | | | |||||||| || ||||||||||| Sbjct 386 CCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 327 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || || | |||| || | ||| ||||| || || Sbjct 326 AGAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGG 267 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || | ||| || | |||||| | ||||| Sbjct 266 ATACCTTCCTTGTC-CTGAATCTTAGCCTTGACGTTG-TCAATGGTGTCTGAGCTCTCCA 209 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| || | || || || || || || || || || ||||||||| || Sbjct 208 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCT 156 >seq78223 Length=3817 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | | |||||||| ||||||||||| || | Sbjct 1993 CCTCCACGCAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCC 2052 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || || |||| | |||| | | ||| || ||||| || Sbjct 2053 AGAGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGG 2112 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | |||| ||| | | || | |||||||| ||| || Sbjct 2113 ATCCCTTCCTTATC-TTGAATCTTTGCTTTCACATTATCAATGGTGTCGGAGCTCTCAAC 2171 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || || |||||||||||||| Sbjct 2172 CTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTGACAAAAATCTGCAT 2219 >seq21431 Length=3066 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | |||||||| || || ||||||||| Sbjct 386 CCGCCACGTAGACGAAGGACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGCA 327 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || || || ||||| | |||| || | ||| ||||| || || Sbjct 326 AGGGTACGCCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGG 267 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || | |||| | | |||||| | ||||| Sbjct 266 ATACCTTCCTTGTCC-TGAATCTTAGCCTTGACGTTGT-CAATGGTGTCTGAGCTCTCCA 209 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| || | || || || || || || || || || ||||||||| || Sbjct 208 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATGCCT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495598649040000