Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq91609 111 1e-19 seq13002 107 2e-18 seq84028 100 3e-16 seq83573 100 3e-16 seq78223 89.7 5e-13 seq101539 87.8 2e-12 seq95352 86.0 6e-12 seq21431 84.2 2e-11 >seq91609 Length=4479 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||||| ||| ||||||||||| || ||||| ||||| || || ||| | ||| Sbjct 232 CCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCC 173 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 || |||| || ||||| ||| | |||| || |||||||||||||| ||||| || || Sbjct 172 GTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 113 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || || || | || | ||||| ||||| || || || || || | Sbjct 112 GTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGATTCCACCTCAAGGGTGAT 53 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || ||||| ||||||||||| || ||||| Sbjct 52 CGTTTTTCCTGTTAGGGTTTTTACAAAGATCTGCAT 17 >seq13002 Length=8172 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||||| ||| ||||||||||| || ||||| ||||| || || ||| || || Sbjct 5173 CCTCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGTCC 5114 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 || |||| || ||||| ||| | |||| || |||||||||||||| ||||| || || Sbjct 5113 GTCCTCCAGCTGCTTTCCCGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 5054 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || || || || |||| || | || | |||||| || ||||| || || || || | Sbjct 5053 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCCACCTCCAGGGTGA 4995 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || || ||||| || || || |||||| Sbjct 4994 TCGTCTTCCCCGTCAGGGTTTTCACGAATATCTGCATC 4957 >seq84028 Length=6065 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||||||||| || ||||| | Sbjct 3404 CCACCACGGAGACGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCG 3345 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | ||| || || ||| | || | | |||||||||||| ||| Sbjct 3344 AGGGTGCGGCCGTCTTCGAGTTGCTTCCCCGCGAAGATGAGCCTTTGCTGGTCCGGAGGA 3285 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| ||||| ||||| ||||| ||| | || | || | ||||||||| || || Sbjct 3284 ATGCCCTCTTTGTCTTGGATTTTGGCTTTTA-CGTTGTCGATGGTGTCGGAGCTTTCCAC 3226 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| ||||| || || ||||| ||||| || |||||| Sbjct 3225 CTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATC 3177 >seq83573 Length=2953 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || ||| | ||| ||| || Sbjct 2336 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCTTC 2277 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||||||| | || | | |||||||||||| |||||||| ||||| ||||| Sbjct 2276 GAGTTGCTTTCCTGCGAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTG 2217 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||| ||| | || | || | ||||||||| || || || || || | || | Sbjct 2216 GATTTTGGCTTTTA-CGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCT 2158 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || ||||| ||||| || |||||| Sbjct 2157 TGCCAGTGAGGGTTTTCACAAAGATCTGCATC 2126 >seq78223 Length=3817 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||||||| || ||||| || || || ||||| | ||| ||| ||||| || Sbjct 2017 TGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCCAACTGC 2076 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| | ||||| ||||| || || ||||| ||||||||||| ||| Sbjct 2077 TTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCTTGAATCTTT 2136 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| ||| || || || || | || || || || Sbjct 2137 GCTTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTTCCAGTC 2196 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 | || || |||||||| |||||| Sbjct 2197 AACGTCTTGACAAAAATCTGCATC 2220 >seq101539 Length=5526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||||||| || ||||| || || || ||||| | ||| ||| ||||| || Sbjct 2014 TGCAGCGTCGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCCAACTGC 2073 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| | ||||| ||||| || || ||||| ||||||||||| ||| Sbjct 2074 TTACCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCTTGAATCTTT 2133 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| ||| || || | || | || || || || Sbjct 2134 GCTTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTTTCCAGTA 2193 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 2194 AGGGTCTTGACAAAGATTTGCAT 2216 >seq95352 Length=5640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || ||||| || || ||||||||||| || ||||| Sbjct 260 CCACCACGGAGACGAAGGACAAGGTGCAGAGTCGACTCCTTTTGGATGTTGTAATCAGCC 201 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||||||| |||||||| | ||||| | ||||| || || || Sbjct 200 AAAGTCCTCCCATCCTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGTGGG 141 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||| || |||||| || | || | || || || ||| || Sbjct 140 ATCCCCTCCTTATCCTGTATTTTTGCCTTCACATTGTCAATTGTATCAGAGCTCTCCACC 81 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||||| ||||| || || | ||||| ||||| || ||||| ||| || Sbjct 80 TCAAGAGTAATGGTTTTCCCAGTCAAGGTTTTCACAAATATCTGCATACCGCCAC 26 >seq21431 Length=3066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| || ||||||||||| | |||| | ||| |||||||| Sbjct 590 TGAAGAGTAGACTCCTTCTGAATATTATAATCTGCAAGGGTTCGACCATCATCCAATTGC 531 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | ||||| ||||| || || || || ||||| || |||||| Sbjct 530 TTCCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTGTATTTTT 471 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | || || || ||| || || ||||||| ||||| || || Sbjct 470 GCCTTCACATTGTCAATTGTATCAGAGCTCTCCACCTCAAGAGTAATGGTTTTCCCAGTC 411 Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | ||||| ||||| || ||||| ||| || Sbjct 410 AAGGTTTTCACAAATATCTGCATACCGCCAC 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451398645720000