Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq88716 86.0 8e-12 seq24040 86.0 8e-12 >seq88716 Length=16829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| | |||||||| |||||| || ||||| || |||||||| || || || ||||| Sbjct 15579 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 15638 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCA 127706 |||||| ||||||| | | ||| ||||| || | || || | |||| ||| Sbjct 15639 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCAC----CATTGATCCACCTCA 15694 Query 127707 TCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||||| ||||| ||||| | |||||||| |||| || || | ||| Sbjct 15695 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAA 15746 >seq24040 Length=12015 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| | |||||||| |||||| || ||||| || |||||||| || || || ||||| Sbjct 4691 ACCTCTCTTCTTCAGCCAGAAGATAGCACAGAAGCTCCCAGAGAAAAAAATTCCTTCCAC 4750 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCA 127706 |||||| ||||||| | | ||| ||||| || | || || | |||| ||| Sbjct 4751 ACACGCAAACGCAATAATCCTCTCAGCAAACGATTCCCCAC----CATTGATCCACCTCA 4806 Query 127707 TCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||||| ||||| ||||| | |||||||| |||| || || | ||| Sbjct 4807 ACGCCCACTTAGCCTTCTTCTCAACACATGGGATCGTCTCAATGGCATGAAA 4858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612686634120000