Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq37473 107 2e-18 seq92424 102 1e-16 seq78138 102 1e-16 seq75469 102 1e-16 seq57524 102 1e-16 seq39191 102 1e-16 seq39177 102 1e-16 >seq37473 Length=54660 Score = 107 bits (118), Expect = 2e-18 Identities = 199/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| |||||||||||| ||||||| ||||| || Sbjct 40807 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCGGCACGGTTAGTAGCTGC 40748 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 40747 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 40688 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 40687 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 40634 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 40633 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 40574 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 40573 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 40526 >seq92424 Length=24121 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 4856 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 4797 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 4796 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 4737 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 4736 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 4683 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 4682 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 4623 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 4622 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 4575 >seq78138 Length=23827 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 4856 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 4797 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 4796 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 4737 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 4736 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 4683 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 4682 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 4623 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 4622 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 4575 >seq75469 Length=16383 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 4856 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 4797 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 4796 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 4737 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 4736 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 4683 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 4682 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 4623 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 4622 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 4575 >seq57524 Length=30065 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 4856 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 4797 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 4796 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 4737 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 4736 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 4683 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 4682 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 4623 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 4622 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 4575 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 25210 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 25269 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 25270 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 25329 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 25330 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 25383 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 25384 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 25443 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 25444 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 25491 >seq39191 Length=17717 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 4856 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 4797 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 4796 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 4737 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 4736 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 4683 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 4682 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 4623 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 4622 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 4575 >seq39177 Length=33841 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 4856 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 4797 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 4796 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 4737 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 4736 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 4683 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 4682 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 4623 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 4622 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 4575 Score = 102 bits (112), Expect = 1e-16 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| | ||||| | |||| ||| ||||||||||| ||||||| ||||| || Sbjct 28986 ATCGAATCTTCCTGGCCTTAGTAAGGCAGAGTCAAGAATATCTGCACGGTTAGTAGCTGC 29045 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || ||||| ||||| || || | |||||||| | Sbjct 29046 AATTACAATAATACCAGTGTTTCCTTCAAAACCATCCATCTCAGTTAAGAGCTGGTTAAG 29105 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC--GAACGCTT--CTTACC 11678 |||||||| | ||||||||| | | || || |||| | ||| | | || Sbjct 29106 GGTCTGTTCCCTCTCATCGTT-----TCCT-CCTCCAATGCCAGTTCCTCTTTGCCTTCC 29159 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| || || ||||||| ||||| || ||||| || | ||||| | ||| Sbjct 29160 AACAGCATCGATTTCATCGACAAATACAATGCACGGAGCATTCTCCTTTGCCTTCTTGAA 29219 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||| ||||| || || || || ||||| || ||||||||||| || Sbjct 29220 AAGGTCACGAACCCGAGAGGCACCGACACCAACAAACATCTCAACAAA 29267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588188244600000